Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00031 ATGGGTTCTCCAAGAATGGATGAGACTGAGACACAAAAGGTAGAGATGAGAAGAAAAGAGAGAGCTTCTATAGCCATCATTTTGAGATATGCTGATTTGATTGATGTTCTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGTATGTCCACAAATATTTTGTTGCTGTTTGCAAGCCGTATCATGAACAGCTTAGGTTACAGTAATAACCAACAAAGTGCTAAGACTTACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTAATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGACAGGTCCTGAGAATTCGTTACAAGTATTTGGAAGCTGTCCTAAGACAAGAAGTTGGGTTTTTTGATTCCCAAGAAGCAACCACTTCTGAAATCATTAATAGCATATCAAAAGACACTTCTCTCATTCAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTCATGCATTCGTCATCATTCATATCCGGGGTTGCCTTTGCCACATATTTCTCTTGGAGGTTGGCCTTAGTAGCATTTCCAACGCTGCTTTTGCTCATTATCCCAGGCATGATTTATGGAAAGTACCTTATCTATTTGTCAAAGTCCTCAGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCCGTCAAAACAGTGTATTCATTCACTGCGGAGAAGAGAATCACTGGGAGATATTCAGACATATTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACAGGTCTCTCCTTTGCAATATGGGCTTTCATTGCTTGGTACGGAAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTTGGAGTGGTGCTTCCTGATTTGAAGTATTTCACAGAAGCATCTGTTGCTGCTTCAAGAATATTTGACATGATTGATCGAATACCATTAATTGATGGTGAAGACACCAAAGGCCTTGTGTTAGATCGCATCAGTGGGAAGCTAGACTTTGAGCATGTCAAATTCACATACCCTTCTCGCCCAGATATGGTTGTGCTTAGTAATTTCAATCTACAAGTAGAAGCAGGGAAAACGGTTGCTCTAGTAGGTGCAAGTGGAAGTGGCAAGTCCACAGCAATAGCATTGGTGCAAAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGCCTACAGTTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCAATGTTTGGGACATCCATAAAGGAGAATATTATGTTTGGGAAGACAGATGCTACCATGGATGAAATAGTTGCTGCAGCCTCAGCAGCCAATGCTCACAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGGGGAGCCCTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTACTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCGGAATTACTGGTTCAGAATGCCCTCGATCAGGCCTCCATGGGGAGGACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCCGACCTCATCGCAGTTGTTAGTGGTGGTCACATCATTGAAACTGGCACACACAATGAACTCATCAACAGACCAAGTGGCCACTATGCAAAACTGGCAAAGTTACAGACACAATTGAGTATGGATGACCAAGATCAGAATCCAGAACTAGGTGCTCTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCCAGGTCAAGTCCTGCCGTATTTCCAAAGTCACCATTACCTGATGAAGCCACCCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACGAGACTTCTCTCTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACACTCTCAGCCATAGCCTTTGGCTCAGTTCAACCCCTATATGCTTTAACCATTGGGGGTATGATTTCTGCCTTTTTCGCAGAAAGCCATCGAGAAATGATGCACAGAATCAGAACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATCACTCTCAATCTCTTGCAACACTATAATTTTGCTTATATGGGAGCTAAGTTAACCAAAAGGATAAGACTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGCGGAGCATTATGCTCAAGGTTAAGCAATGAGGCTTCCATGGTCAAGTCCCTTGTGGCAGACAGACTCTCTTTACTAGTTCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACGATTCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTATTAAGGCACAGAATCAAAGTACACAAATTGCAGTAGAGGCAGTTTATAATCACAGAATTGTGACTTCTTTCGGGAGCATTACAAAAGTTCTACGGCTATTTGATGAGGCGCAAGAGGCGCCAAGGAAGGAGGCAAGGAAGAAGTCTTGGCTAGCTGGCGTAGGAATGGGTTCTGCTCAGTGCCTAACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACCGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTAGCATCTGTGTTTGAGATTCTTGACCGGAAATCACTAATTCCCAAGGCTGGGGATAACACTAGTGGCATTAAGTTGGAAAAGATGAGTGGAAAGATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGCAGGGCAGGCACACCAATTTTGCGGAAGTTTTGCTTGGAGGTGAAGCCGGGAAAAAGTGTTGGGCTGGTTGGAAAAAGTGGATGTGGAAAATCAACAGTCATTGCCTTAATTCAAAGATTCTATGATGTTGAGAGAGGTTCAGTTAAAGTGGATAATGTAGACATAAGGGAATTAGACATTCACTGGTACAGGCAGCACACAGCACTAGTGAGCCAAGAACCTGTGATATATTCTGGAAGCATACGTGACAACATTTTGTTTGGGAAGCAAGATGCAACTGAAAATGAAGTAGTTGAGGCTGCAAGAGCTGCAAATGCCCATGAGTTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGCAACCCAAAGATACTACTTCTAGATGAGGCAACAAGTGCTCTGGATGTGCAATCAGAACAAGTAGTGCAAGAAGCACTTGATAGAACAATGGTAGGCAGAACCACCATTGTTGTGGCACATAGGCTTAACACCATCAAAGAGCTTGATTCAATAGCTTATGTGTCTGAGGGCAAGGTCCTGGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCCAGCCATCAAATCCAAACTTAG 3723 0.4322 MGSPRMDETETQKVEMRRKERASIAIILRYADLIDVLLMLMGALGAIGDGMSTNILLLFASRIMNSLGYSNNQQSAKTYMAEVEKCSLYFVYLGLAVMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFFMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSVKTVYSFTAEKRITGRYSDILCRTSRLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDRISGKLDFEHVKFTYPSRPDMVVLSNFNLQVEAGKTVALVGASGSGKSTAIALVQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGHIIETGTHNELINRPSGHYAKLAKLQTQLSMDDQDQNPELGALSAARSSAGRPSTARSSPAVFPKSPLPDEATPSPVSHPPPSFTRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHREMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAKLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFIKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKSWLAGVGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLASHQIQT* 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00031 1240 SMART AAA_5 1027 1219 IPR003593 GO:0016887
Lapu4g00031 1240 SMART AAA_5 392 584 IPR003593 GO:0016887
Lapu4g00031 1240 Gene3D - 990 1240 IPR027417 -
Lapu4g00031 1240 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 338 - -
Lapu4g00031 1240 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016020
Lapu4g00031 1240 FunFam ABC transporter B family member 1 26 362 - -
Lapu4g00031 1240 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lapu4g00031 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00031 1240 Pfam ABC transporter transmembrane region 677 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00031 1240 Pfam ABC transporter transmembrane region 41 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00031 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1237 IPR027417 -
Lapu4g00031 1240 Gene3D ABC transporter type 1, transmembrane domain 27 903 IPR036640 GO:0005524|GO:0016020
Lapu4g00031 1240 CDD ABC_MTABC3_MDL1_MDL2 1000 1237 - -
Lapu4g00031 1240 Pfam ABC transporter 1021 1167 IPR003439 GO:0005524
Lapu4g00031 1240 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Lapu4g00031 1240 MobiDBLite consensus disorder prediction 621 657 - -
Lapu4g00031 1240 MobiDBLite consensus disorder prediction 621 638 - -
Lapu4g00031 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00031 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 603 IPR027417 -
Lapu4g00031 1240 FunFam ABC transporter B family member 4 355 611 - -
Lapu4g00031 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lapu4g00031 1240 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Lapu4g00031 1240 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Lapu4g00031 1240 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Lapu4g00031 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Lapu4g00031 1240 FunFam Putative ABC transporter B family member 8 643 985 - -
Lapu4g00031 1240 PANTHER ABC TRANSPORTER B FAMILY 10 688 IPR039421 -
Lapu4g00031 1240 FunFam ABC multidrug transporter SitT 990 1238 - -
Lapu4g00031 1240 Gene3D - 355 604 IPR027417 -
Lapu4g00031 1240 SUPERFAMILY ABC transporter transmembrane region 663 977 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00031 Lapu-Chr4 384471 393201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00031 40 603 Calmodulin-binding Proteins AT2G36910 36.000 1.08e-98 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00031 K05658 - gmx:100801088 2241.85