Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00026 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGCCATAATTCCAGGACCTGCTCATCTTTCAGAGCAACTTTTGTAGGAGTTCGTCTCTTCGGGGTTCAACTACAGATATCAAACTCTTCTTCTCTTACCATCAAGAAAAGCTTCAGCATGGATTCCTTGCCCTTATTATCCTCTCCATCTTCCTCAAGAACATCTATTCACGACCATCCCGACAAAACCTCTATTGGCTATCTGTCAGATTCAGATGGCCTCATTGTTCGAGCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGACTTGAGAAGCTGGGAAAAGGTGATTGGAGAGGTATCTCTAGAAACTATGTCACTACAAGAACCCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTATTCGGCTTGCAACCTTGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGCGGCAGCTCTAACTGTAAGTCAGGTGATTTAGTTTCTCCTACAGAATCAAAAGGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAATTACAAGAAGCCAAGACAGATGAGCAGAAAGATAGTGATAATTGTTGTGAAGCTCAACCAGGTGCAGATCTGGAAGCTGTTATGTGGCTTCATCCTCAGATGAAATCTTCAAATAATATTGCAGCAGTTCCTGATCTAGAACTCACTCTTTCAGTCTCCAAGGGCAAGGCTAAGACCATGGAACAAACTAAATCAACCCCGGGTTCCTTTCTTCTTGGCCCAATTCCCGTGACTTAA 813 0.4293 MGRKCSHCGNIGHNSRTCSSFRATFVGVRLFGVQLQISNSSSLTIKKSFSMDSLPLLSSPSSSRTSIHDHPDKTSIGYLSDSDGLIVRAQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNCKSGDLVSPTESKGEIENDVTLSLLQLQEAKTDEQKDSDNCCEAQPGADLEAVMWLHPQMKSSNNIAAVPDLELTLSVSKGKAKTMEQTKSTPGSFLLGPIPVT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00026 270 CDD SANT 97 142 IPR001005 -
Lapu4g00026 270 Gene3D - 96 148 - -
Lapu4g00026 270 PANTHER TRANSCRIPTION FACTOR KUA1 3 230 - -
Lapu4g00026 270 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Lapu4g00026 270 FunFam transcription factor MYB1R1 96 147 - -
Lapu4g00026 270 ProSiteProfiles SANT domain profile. 98 146 IPR017884 -
Lapu4g00026 270 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 144 IPR006447 GO:0003677
Lapu4g00026 270 SMART sant 94 144 IPR001005 -
Lapu4g00026 270 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Lapu4g00026 270 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Lapu4g00026 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Lapu4g00026 270 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
Lapu4g00026 270 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00026 Lapu-Chr4 341665 343815 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g00026 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00026 - - pvu:PHAVU_004G171200g 434.106