Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00012 ATGAAGACGCATCCTCCGCCGCCCGACCCTGCCTCCTCCGCCGCTCCCAATCCCAATCCCTCCCAGGAGAAGAGGAGCATAAACCCGGAGCTCTGGCAAGCTTGTGCAGGGCCTTTGGTAAATCTTCCTCCCTCCGCCACACACGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTCTCAAGAAAGATGTCGACGCTCAAATCCCCAACTATCCCAATCTCCCCTCTAAGTTACTCTGTCTCCTTCACAATCTCACTTTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACTCTTCAACCCGTCCCTTCTTTCGACAAGGATGCTCTCTTGAGATCAGATCTTGCTCTCAAGTCCACCAAGCCTCAACCCGACTTCTTCTGTAAACAGCTAACCGCAAGTGATACCAGCACTCACGGAGGTTTTTCTGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCTCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGTCACTTGCTTACCACGGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTCTTCGCCGGGGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCTGCTCATGCAGCCGCCAACAATAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCCGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCAGTGTACAGCCACCAACCATCACTTGGGATGCGTTTTCGAATGATGTTTGAAACCGAAGACTCGGGAAATAGAAGGTATATGGGTACGATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAACTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCAGTAACTGCTCCATTTTTCATCTGCCCGCCTCCGTTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCTGATGATGAATTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTCGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCAGGCCTGAGCTTAGCTCAATGGATGAACGTGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTTTGCACCTTCTTTATCGGGATCTATTTTACAAAATATTCCCGGAGCTGATATATCTCGGCAGCTGGGATTTCCTGCTCCACAAATTTCTCAGTCAAACAACGTAGCCTTCACTACTCAGAGACTACTTCAGACTGCTCAACAGCTGGATCACCTACAGAAGCTACCATCTACATCTAGCACATTGGGAACAGTCATGCCTCCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATGCCACAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAGAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAATCATCCATTCAAAACCATCAAATGCATAGAAGCCTCCCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAATTTGATCCAGTCCCCTATCCCTGATCATGTTCAACAATTACAGATCTCCGATAATCAGATTCAGTTGCACTTGTTACAGAAGCTTCAACAACAAAAACAAACGCACTTGGCCCAGCAAACAGTGTTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACGCATAACTTGTCTAGAGCACTAACACCTGGTCAAGTACTGGAAATTCCTCCTATGCTTCAAAATTCGCTACCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAATATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCACATGGCACTTCTCCCTACCCCTACAACTAACCAACTTTCTGCTGCTGGTAGTAGTATACTGAATGGAGCAGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCATCTTGCTCCACCTCACCTTCTACAAATAACTGTGCCAATGCACTTCCATCATTGATAAATTCTCGATTGCAGAGAAACACAGTAGTAGGGGATGACATGGCTCAGTCTGCATCAACAATCTTGAGTTCAACTGGACTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTGCAACCAAAGTCTGAAGTTAAACCTTCTCTGAATATTTCCAAAAATCAGAATCAAGGGCATTTTGGTCTTCAGTCATACTTGAATGGTAGTGCTGGACATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGTCTTTCTCAGAGTGACGCTCATATGCATCAGAATAATAATCCATTAGCTTACAATCCACATTCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGAAGCAATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTGACCAAGGGCACATTGGGTTTGGGGAAGGATTTGTCCAATAATTTCTCTTCAGAAGGCCTACTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATTGATGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCAGCACCGCCACCACCACCTCTGCCACCAGCACAGTTTCAGCGAATTAGGACATATACGAAGGTATATAAACGTGGAGCTGTGGGAAGATCCATAGACATAACACGGTATTCAGGTTATGAGGAGCTTAAACAGGATCTAGCTCGCAGATTTGGGATAGAGGGGCAGCTGGAGGATCGACAGAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGAGTGATGTTCTATTGGTGGGAGATGATCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCGTGTAGCAGCTCTGACGGTGGGAATACTTAA 3351 0.4524 MKTHPPPPDPASSAAPNPNPSQEKRSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGNRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDELSDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNVQQNPALASSLQPNFAPSLSGSILQNIPGADISRQLGFPAPQISQSNNVAFTTQRLLQTAQQLDHLQKLPSTSSTLGTVMPPQQQLGDITQQSRQNLANQTMPQSQVQAQLLHPQNIVQTNNILQQQQSSIQNHQMHRSLPQNPSQQQTIIGQSQQQNLIQSPIPDHVQQLQISDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLSRALTPGQVLEIPPMLQNSLPEANSISNQITKANFQNNIQFPQQPKLQQQQPGLLSEMSGHMALLPTPTTNQLSAAGSSILNGAAGAGQSVITDDVPSCSTSPSTNNCANALPSLINSRLQRNTVVGDDMAQSASTILSSTGLETMSSNANLLKDLQPKSEVKPSLNISKNQNQGHFGLQSYLNGSAGHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHSMLFRDNSQDGEVQADARSNIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEGLLGNYENNRDAQQELSSSMVSQTFGVPDMAFNSIDSTIDDSSFLNRGPWAPPPAPPPPPLPPAQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00012 1116 Gene3D - 132 235 IPR015300 -
Lapu4g00012 1116 FunFam Auxin response factor 999 1093 - -
Lapu4g00012 1116 MobiDBLite consensus disorder prediction 1 15 - -
Lapu4g00012 1116 Gene3D - 999 1093 - -
Lapu4g00012 1116 FunFam Auxin response factor 298 369 - -
Lapu4g00012 1116 FunFam Auxin response factor 132 236 - -
Lapu4g00012 1116 Gene3D - 298 369 - -
Lapu4g00012 1116 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu4g00012 1116 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 621 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu4g00012 1116 SUPERFAMILY DNA-binding pseudobarrel domain 124 263 IPR015300 -
Lapu4g00012 1116 ProSiteProfiles PB1 domain profile. 1004 1088 IPR000270 GO:0005515
Lapu4g00012 1116 SUPERFAMILY CAD & PB1 domains 1018 1082 - -
Lapu4g00012 1116 CDD B3_DNA 133 225 IPR003340 GO:0003677
Lapu4g00012 1116 Pfam AUX/IAA family 1004 1089 IPR033389 -
Lapu4g00012 1116 SMART B3_2 134 236 IPR003340 GO:0003677
Lapu4g00012 1116 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Lapu4g00012 1116 MobiDBLite consensus disorder prediction 983 997 - -
Lapu4g00012 1116 MobiDBLite consensus disorder prediction 1 25 - -
Lapu4g00012 1116 MobiDBLite consensus disorder prediction 977 997 - -
Lapu4g00012 1116 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00012 Lapu-Chr4 257460 264159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00012 23 477 B3 DNA Binding Superfamily AT1G19220 72.926 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu4g00012 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00012 - - ccaj:109803454 1885.15