Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00003 ATGCTGGAAGGTGGTGCAAAATTTCCTGGAATAATAGACCTCAACAAACACAACGATAACTACTATGATTTCTCTCAGGGCTTTTATCATAAGCTTCAGGAGGGCACCGATATGTCAATTGACAGCATTGGGAGCTTGCGAACGAGTAACGGTGGAGGATCTGTTGCAATGTCCATTGATAATAGCAGTGTTGGCTCCAATGATTCACATACTCACATATTGAACCACCAAGGGTTGCGGAGACGTGCCAATGATAATTACTCCATTGCACACAGTGTCAATCATCGAGGAAGAGTCACACATGCTTTGAGTGATGATGCTTTGGCTCAAGCACTAATGGACAGTAGTTCCCCAACTGAGGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGAGCTTTCGGGAAACTCTACAGAGGTACTTACAATAATGAAGATGTTGCTATCAAAATCTTGGAGAGGCCTGAAAATGATTCAGCAAAGGCTCAGTTGATGGAACAACAGTTTCAGCAGGAGGTGATGATGCTGGCTACACTAAATCATCCCAACATAGTTCGCTTTATTGGTGCATGCCATAAGCCAATGGTATGGTGTATTGTTACAGAATATGCAAAAGGGGGTTCAGTTCGGCAATTTTTAATGAAGCGACAAAATCGATCAGTGCCACTCAAATTGGCTGTTAAACAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGCCTTGGGTTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTAGTGACAAATCAATCAAAATTGCTGATTTTGGAGTTGCACGGATTGAGGTGCTAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAGGTGGATGTATATAGCTTTGGGATTGTTTTATGGGAACTCATCACAGGAATGCTTCCATTTCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTGACAAAAAACGTTCGCCCAATTATACCCAATGACTGCTTACCTGTTCTCCGTGAGATCATGACAAGATGCTGGGATCCCAACCCTGATGTTAGGCCATCGTTTACTGAAATTGTAGGAATGCTTGAGAACGCAGAGACTGAGATTATGACAACTGTTCGGAAGGCCCGATTTAGGTGTTGCATGACACAACCAATGACTGCTGACTGA 1251 0.4341 MLEGGAKFPGIIDLNKHNDNYYDFSQGFYHKLQEGTDMSIDSIGSLRTSNGGGSVAMSIDNSSVGSNDSHTHILNHQGLRRRANDNYSIAHSVNHRGRVTHALSDDALAQALMDSSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKILERPENDSAKAQLMEQQFQQEVMMLATLNHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFSDKSIKIADFGVARIEVLTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVTKNVRPIIPNDCLPVLREIMTRCWDPNPDVRPSFTEIVGMLENAETEIMTTVRKARFRCCMTQPMTAD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00003 416 Gene3D Transferase(Phosphotransferase) domain 1 218 412 - -
Lapu4g00003 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 CDD STKc_MAP3K-like 142 389 - -
Lapu4g00003 416 Pfam Protein tyrosine and serine/threonine kinase 136 388 IPR001245 GO:0004672|GO:0006468
Lapu4g00003 416 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 392 - -
Lapu4g00003 416 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Lapu4g00003 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Lapu4g00003 416 SUPERFAMILY Protein kinase-like (PK-like) 117 389 IPR011009 -
Lapu4g00003 416 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00003 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Lapu4g00003 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00003 416 FunFam serine/threonine-protein kinase HT1 218 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00003 Lapu-Chr4 170543 175739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00003 24 416 MAP Kinase Kinase Kinase AT2G24360 77.354 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lapu4g00003 PK_Tyr_Ser-Thr 5.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00003 - - gmx:100788536 789.645