Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03979 ATGGAGTATGGGAGTGCAGGCGGTGGCTCTCAGTCTGCTGGCGAACATGATGCTTCGGATTCCCATGAGAAGCGTAAGCGCTATCATCGTCACACTTCCAACCAGATTCAGAGGCTTGAGTCATTGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAACGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCATCACGAGAGAGCTGACAACTGTACTCTTCGCGCTGACAATGACAAGATACGCTGCGAGAACATTGCTATCAGAGAGGCTTTGAGAAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTATCCAGCATCGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCTCCGGTTCAGCCTATTCATTTATCGTCTCTTGACTTGTCCATGTCATGTTTTGGAAACCAAGGGATGCTTGATCATGTTCCTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACCTCCTCATCCGTGCCAAATATGCCTTTTCAGCCTCCTTACCTTTCGGACATGGACAAGTCGCTTATGTCCGACATTGCTTCCAATGCCTTGGAAGAATTACTCAGGCTGGTGCACACAAACGAACCCTTGTGGCTCAAGTCAAACGTCGACGGGAGAGATGTCCTTAATTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGCCCCAAGCATCCTAATGTTCGCCTTGAAGCATCACGAGATTCTGGAGTTGTATTAATGAGTGGTTTAGCTTTGGCTGACATGTTTATGGACCCAAACAAGTGGATGGAACTTTTTCCCACTATTGTCTCAGTGGCAACTACCGTTCAAGTCATATCTTCGGGCATGATGGGTGGTTCCTTGCAATTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTACTAGGGAGTTCTACTTCCTGCGCTACTGCCAGCAAATTGAGAAAGGCACATGGGCAGTGGTGGACGTTTCTTATGATCTTCCCCAAGACAGCCACTTTGCTCCTCAATTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTAATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTTGCAACCCTCCAGAGAATGTGCGAAAGACTTACTTATCTGATGGTTACTTCCAATTCAACCCGGGATAATACTGGTGGAGCAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTCTGTGCCAGCATTGGCACATCGAGTGGCCACCGGTGGACCACAATCTCTGGGTTGAATGAAATCTTAATCAGAGTCACTGTCCAAAAAAGCTCAAATCCTGGACAACCTAATGGCGTGGTGCTAAGTGCAGCCAGTACCATTTGGCTCCCCACCCCTCCACACACTGTTTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAGCAAATGGTCCACACCCTGGTAACAGCGTATCAGTTCTTCGAGCTTACAACGCGAGTCAGAACATGTTAATACTCCAAGAGAGCTGCATAGATTCCTCTGGTTCACTTGTGGTTTACTGCCCAGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCCTTGCTACCAAATGGGTTTACCATTTTGCCAGATGGGCAGGCTGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGGAAACAGGAACAAGGCAAGGTCTGGGGGTTCACTAGTGACAGTTGCATATCAGATTCTAGTGAGCACCTCGCCATCTGCCAAGCTGAATATGGAGGTGACAACTGTCAGTAATCTGATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAG 2148 0.4772 MEYGSAGGGSQSAGEHDASDSHEKRKRYHRHTSNQIQRLESLFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAHHERADNCTLRADNDKIRCENIAIREALRNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQGMLDHVPAPSPSLNLDLLSAGTSSSVPNMPFQPPYLSDMDKSLMSDIASNALEELLRLVHTNEPLWLKSNVDGRDVLNSDAYERIFPKPNSRPKHPNVRLEASRDSGVVLMSGLALADMFMDPNKWMELFPTIVSVATTVQVISSGMMGGSLQLMYAELQVLSPLVSTREFYFLRYCQQIEKGTWAVVDVSYDLPQDSHFAPQFRSHRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSNSTRDNTGGAISSAEGKRSMMKLAQRMVTNFCASIGTSSGHRWTTISGLNEILIRVTVQKSSNPGQPNGVVLSAASTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQIANGPHPGNSVSVLRAYNASQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGQAEQEGDGASTSSNGNRNKARSGGSLVTVAYQILVSTSPSAKLNMEVTTVSNLIGSTVQQIKASLSCPT* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03979 715 MobiDBLite consensus disorder prediction 645 667 - -
Lapu3g03979 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 711 IPR042160 -
Lapu3g03979 715 MobiDBLite consensus disorder prediction 651 667 - -
Lapu3g03979 715 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Lapu3g03979 715 CDD homeodomain 24 83 IPR001356 GO:0003677
Lapu3g03979 715 MobiDBLite consensus disorder prediction 1 34 - -
Lapu3g03979 715 FunFam Homeobox-leucine zipper protein GLABRA 2 229 450 - -
Lapu3g03979 715 Pfam START domain 231 451 IPR002913 GO:0008289
Lapu3g03979 715 SUPERFAMILY Homeodomain-like 8 81 IPR009057 -
Lapu3g03979 715 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Lapu3g03979 715 SUPERFAMILY Bet v1-like 474 691 - -
Lapu3g03979 715 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Lapu3g03979 715 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Lapu3g03979 715 SMART HOX_1 23 86 IPR001356 GO:0003677
Lapu3g03979 715 CDD START_ArGLABRA2_like 224 450 - -
Lapu3g03979 715 SUPERFAMILY Bet v1-like 221 452 - -
Lapu3g03979 715 Gene3D - 11 94 - -
Lapu3g03979 715 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Lapu3g03979 715 Gene3D - 229 451 IPR023393 -
Lapu3g03979 715 SMART START_1 229 451 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03979 Lapu-Chr3 63174330 63177249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03979 20 715 Homeobox Transcription Factor Family AT1G73360 62.093 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu3g03979 START 4.6e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03979 K09338 - gmx:100796042 1249.96