Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03975 ATGGCCTCCCTAGTAAGGATTGACATGTTAGTCAACAATTCATCTCCCTCCTCGCTTCCCACTTCTGAGCCCTTTTCCTGCGCTCAGAATGCTACTGCCACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCCGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTCGAATCAGATCGTTACGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTCTTGAAGAGGGAGACGCCGCTGGTGAAGAAGCGAGTTTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCGTGCCATGCTCTGGGTGATCTTGTTGGCATAAAGAAGCACTTCAGAAGGAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGGTGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTTAAAACCTGTGGCACACGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGGGGCCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACCGCTTCGAGCCCTTCCAGCGAAAACAATTTCAGCACAGGTGCCCCTTGGCAAGGCGGTGTAATAATTCCAAAGCCCACCGTAACAGTAGTAGAACCTCCCTCATTCACCAACGCTACCACTGCACAAACCAACAACGACAACAAAGTGAACAAACTCCACCCCAACCTTGAGCTTCAGCTCTCTACTGCCACTCCTATTGAAATGATCGCGGCTGCATCAGCCGCAGGCAATAAGAGAGACGGCAACCCCTCCTCACAGTTGCAGCTATCCATAGGGTCATTGGAAAAAATGAACACGAGGGAGAAGATTGGGGAGAAGTCATTGGGAGAAATGGTTCAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCATATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCTGGCGGAACTCGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGTGCTTTGAAGGACCATGCAATCAAACAGATCAATTCAACCATGCTTCAAATCACTTGCCTTGCTTGCAAGCACCATTTCCAATCGCGAACCATAACGTGTACTTCTCCGCCCGACGAGACCTCTTTCGTCTTGAGCTACATAACAACAGACGGTGGTCAAGTTGGAAAACATCGTGTCAAAGCCATTAACTCATAG 1326 0.5143 MASLVRIDMLVNNSSPSSLPTSEPFSCAQNATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAVQAAACLSRTASSPSSENNFSTGAPWQGGVIIPKPTVTVVEPPSFTNATTAQTNNDNKVNKLHPNLELQLSTATPIEMIAAASAAGNKRDGNPSSQLQLSIGSLEKMNTREKIGEKSLGEMVQDEAREQLRIAVAEKAYAEEARKQAKRQMELAELEFTNAKRIRQQALAELDKACALKDHAIKQINSTMLQITCLACKHHFQSRTITCTSPPDETSFVLSYITTDGGQVGKHRVKAINS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03975 441 SMART c2h2final6 65 87 IPR013087 -
Lapu3g03975 441 SMART c2h2final6 106 136 IPR013087 -
Lapu3g03975 441 SMART c2h2final6 142 169 IPR013087 -
Lapu3g03975 441 SUPERFAMILY beta-beta-alpha zinc fingers 62 88 IPR036236 -
Lapu3g03975 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Lapu3g03975 441 FunFam protein indeterminate-domain 12-like 44 112 - -
Lapu3g03975 441 Gene3D Classic Zinc Finger 127 205 - -
Lapu3g03975 441 MobiDBLite consensus disorder prediction 12 51 - -
Lapu3g03975 441 MobiDBLite consensus disorder prediction 12 37 - -
Lapu3g03975 441 Gene3D Classic Zinc Finger 43 106 - -
Lapu3g03975 441 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lapu3g03975 441 Coils Coil 338 365 - -
Lapu3g03975 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 387 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03975 Lapu-Chr3 63115212 63117900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03975 32 428 C2H2 Transcription Factor Family AT2G01940 54.654 3.86e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g03975 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03975 K25871 - gmx:100800187 597.43