Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03974 ATGGAAGGAGGATCTGGCGAGAAGTGGAAGAGTGTATACAGAGAGTGCCTGAGAAACCATGCAGCCAGCCTGGGAAGCTACGCCACCGACGGCTGCGGGGAGTTCACGATGGACGGCGGGGGGCTACAATGCGCGGCATGCGGGTGCCACCGGAACTTCCACCGGAAAGTGAAGTACCCGGTGGGTCCGGAAAGTCCTGGAGCGATGGATTACGGAGGGGAGGGGGGGAGTAAGAAGAGGTTCAGGTCGAAGTTCAGCGCAGATCAGAAGGAGAAGATGCTGGCGTTTGCTGAGAAGCTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTTAGCAGGCAGGTGTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCTTCTGCTTCCACCGGAAACATCTCCTCCCTCACCACCCACTAA 471 0.5478 MEGGSGEKWKSVYRECLRNHAASLGSYATDGCGEFTMDGGGLQCAACGCHRNFHRKVKYPVGPESPGAMDYGGEGGSKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASTGNISSLTTH* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03974 156 Pfam ZF-HD protein dimerisation region 12 57 IPR006456 -
Lapu3g03974 156 FunFam Zinc-finger homeodomain protein 2 68 140 - -
Lapu3g03974 156 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 137 - -
Lapu3g03974 156 NCBIfam homeobox domain, ZF-HD class 78 136 IPR006455 -
Lapu3g03974 156 Gene3D - 67 142 - -
Lapu3g03974 156 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 57 IPR006456 -
Lapu3g03974 156 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Lapu3g03974 156 MobiDBLite consensus disorder prediction 135 156 - -
Lapu3g03974 156 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 13 56 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03974 Lapu-Chr3 63102896 63103507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03974 10 137 ZF-HD Transcription Factor Family AT4G24660 43.860 2.43e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g03974 ZF-HD_dimer 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03974 - - pvu:PHAVU_002G332400g 306.99