Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03969 ATGCAGAGAATAAAGGATACGTCTCTCTCCACCTTCACCCGCTGCTACGGCCGTCCCACCCCAGATGCATGGCCCTGCCGCCGGTTCCTCATTCATCCTCACAATCGGTGGTACCTGTTGTGGAAGCACTTCATTCTGATATGGGCTATTTACTCTTCATTCTTCACTCCCATGGAGTTCGGTTTCTTCAGAGGCCTACCTCACAACATATTCCTCCTTGACATAGCGGGGCAATTGGTCTTCCTGGTGGACATGGTCCTCCAGTTCTTCCTGGGATATCACGAACTCCACTCCAACTCCCTCTCCTTGGTCCTCAACCACTACCAAATCGCCATCAGATACCTCAAGTCTCGCTTCCTCCTCGACCTTCTCTCCTGTCTCCCCTGGGACTACATTTACAAGCGCACCAACAACAACGAGCTCGTTCGTTCTCTGCTTTGGATCAGACTCGCTCGTGCTTCCCGCGTCTCCCAATTCTTCGACGCCCTCGAGAAGGATACCAGGATCAATTACTTGTTCACCAGAATCCTCAAACTCTTCGTCGTTGAACTCTACTGCACCCACACCGCTGCATGCATCTTTTACTATCTTGCCACCACCTTGCCCCCTTCCCAGGAGGGTTACACCTGGATTGGTAGCTTGAAGATGGGGGACTATGCATATTCTGACTTCCGACACATCCATCTCTGGAAGCGTTATGTCACCTCCCTCTACTTTGCGGTTGTCACCATGGCCACCGTCGGCTACGGAGAGATCCACGCAGTCAATGTGCGTGAAATGATATTCGTCATGATTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTTCTGGGCAACATGACTGCGTTGATCGTCAAAGGCTCTAAGACAGAGAGATTCAGAGATAAAATGTCTGATATTACTAAGTACGTCAATAAGAACAAACTGGACAGTCAGATATTTAACCAAATTAAAGATCACTTGAGGTTAAAGTATGATCGAAGTTATTCAGGATCTTTCATTCTTCAGGAGATACCAACCACCATTCGCGCGAAGATTTCAATAAGCTTGTACGAACAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCGGGGTTTATAAAGCAGATCGCAACCAAAGTCGATGAAGAGTTTTTCCTCCCAGGAGAATTAGTTACGGAGCAAGGAGATGTTGCAGATAACCTCTACTTTGTATACCATGGTGGGCTGCGTGAGATGACGAGGGAAGACGGTGATACAGAAGAAGAGACCATCACATTGCATACTTATAGTTCCTTCGGCCATGTTTCTTTTTTTTGCAATATACCTCAAAGTTCTACAGTTGAAGCTTATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTCTAGATGGTCGTGTTGTCTTGAACAATCTCCTTGAGGTGGAAGACTCACATTTCCAGCGTAAGCTTTTGTTATCAGACTTCAACCTCACTATTGGAAACATGGAAACAGAGCTGGCTACAAGGCTGAACTGTGCTGCCCATGATGGTCATCTTGATCTTATGAAACGTTTGATTGGATTTGGGGCAGATCCCAATAAAACTGATTATGATGGCAGAACGCCATTGCATATCTCAGCATCAAAAGGATACGTGGATATTTCTTCCTTTCTTATTAAACAAGGAGTATACATGAATACTGCAGATAAATTTGGCACCACTCCCTTGCTCGAAGCCCTCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAACGCGGGAGCTATCCTTACTATTGATGACGTTGGCAGTTTTCTCTGCATGACAGTTGCAAAGAAGGAGTTTGACCTTTTAAAAAGGGTTCTAGCTTGTGGTATTAATCCAAATGCCAAAAATTATGATCAACGTACCCCTCTTCACATTGCAGCCTCTGAAGGCTTCTTTAAAATGGTTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGCGGAAACAGAAATATGATCAAAATGCTTGAAGTTGCAAAAGTTTCTCAGTTGGCCGAGTTGTCCGAAAATATTCGTGAAACTCAAGCAACACCAATGTTGCAGTCAACAAATGAAATTCCTAAAAGGAGATGTGTAGTGTATCCTTTTCACCCATGGGATGACAAAGCGGGTAAAAAAGAGGGAGTGGTCCTATGGGTCCCACAAAGCATTGAAGAGCTTATAAAGGAGGCTGGGAAACATTTGGAAACTACCAACAATTCCTATATTTTGTCAGAACAAGGTGGAAAAATTCTTTATGTAGACATGATTAACAACGACGAGAAGCTATTTGTAGTGAGTGAAGCAGAAAAAGAGGTGAAATGA 2400 0.4383 MQRIKDTSLSTFTRCYGRPTPDAWPCRRFLIHPHNRWYLLWKHFILIWAIYSSFFTPMEFGFFRGLPHNIFLLDIAGQLVFLVDMVLQFFLGYHELHSNSLSLVLNHYQIAIRYLKSRFLLDLLSCLPWDYIYKRTNNNELVRSLLWIRLARASRVSQFFDALEKDTRINYLFTRILKLFVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKMGDYAYSDFRHIHLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDITKYVNKNKLDSQIFNQIKDHLRLKYDRSYSGSFILQEIPTTIRAKISISLYEQFIQKVSLFKGCSSGFIKQIATKVDEEFFLPGELVTEQGDVADNLYFVYHGGLREMTREDGDTEEETITLHTYSSFGHVSFFCNIPQSSTVEAYEFCKVLRLDKKSFTEILKIYFLDGRVVLNNLLEVEDSHFQRKLLLSDFNLTIGNMETELATRLNCAAHDGHLDLMKRLIGFGADPNKTDYDGRTPLHISASKGYVDISSFLIKQGVYMNTADKFGTTPLLEALKNGHEEVASVLVNAGAILTIDDVGSFLCMTVAKKEFDLLKRVLACGINPNAKNYDQRTPLHIAASEGFFKMVELLLEAGASVLSKDRWGNTPLHEAHTGGNRNMIKMLEVAKVSQLAELSENIRETQATPMLQSTNEIPKRRCVVYPFHPWDDKAGKKEGVVLWVPQSIEELIKEAGKHLETTNNSYILSEQGGKILYVDMINNDEKLFVVSEAEKEVK* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03969 799 SMART ANK_2a 635 664 IPR002110 GO:0005515
Lapu3g03969 799 SMART ANK_2a 571 600 IPR002110 GO:0005515
Lapu3g03969 799 SMART ANK_2a 538 567 IPR002110 GO:0005515
Lapu3g03969 799 SMART ANK_2a 668 697 IPR002110 GO:0005515
Lapu3g03969 799 SMART ANK_2a 505 534 IPR002110 GO:0005515
Lapu3g03969 799 SUPERFAMILY cAMP-binding domain-like 289 479 IPR018490 -
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat profile. 538 570 IPR002110 GO:0005515
Lapu3g03969 799 ProSiteProfiles cAMP/cGMP binding motif profile. 361 464 IPR000595 -
Lapu3g03969 799 FunFam Potassium channel KAT3 40 287 - -
Lapu3g03969 799 PRINTS EAG/ELK/ERG potassium channel family signature 277 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g03969 799 PRINTS EAG/ELK/ERG potassium channel family signature 185 195 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g03969 799 PRINTS EAG/ELK/ERG potassium channel family signature 233 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g03969 799 PRINTS EAG/ELK/ERG potassium channel family signature 74 84 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat profile. 505 537 IPR002110 GO:0005515
Lapu3g03969 799 SUPERFAMILY Voltage-gated potassium channels 32 286 - -
Lapu3g03969 799 Pfam Ion transport protein 40 285 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat region circular profile. 538 570 - -
Lapu3g03969 799 FunFam Potassium channel KAT2 349 485 - -
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Lapu3g03969 799 CDD CAP_ED 361 475 IPR000595 -
Lapu3g03969 799 SMART cnmp_10 361 479 IPR000595 -
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat region circular profile. 635 667 - -
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Lapu3g03969 799 Pfam Cyclic nucleotide-binding domain 381 465 IPR000595 -
Lapu3g03969 799 PRINTS Ankyrin repeat signature 651 665 IPR002110 GO:0005515
Lapu3g03969 799 PRINTS Ankyrin repeat signature 539 554 IPR002110 GO:0005515
Lapu3g03969 799 SUPERFAMILY Ankyrin repeat 464 688 IPR036770 -
Lapu3g03969 799 ProSiteProfiles KHA domain profile. 722 799 IPR021789 -
Lapu3g03969 799 Pfam Ankyrin repeats (3 copies) 612 688 IPR002110 GO:0005515
Lapu3g03969 799 Pfam Ankyrin repeats (3 copies) 512 600 IPR002110 GO:0005515
Lapu3g03969 799 Gene3D - 500 598 IPR036770 -
Lapu3g03969 799 Gene3D - 40 287 - -
Lapu3g03969 799 Pfam KHA, dimerisation domain of potassium ion channel 721 790 IPR021789 -
Lapu3g03969 799 Gene3D - 599 718 IPR036770 -
Lapu3g03969 799 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Lapu3g03969 799 Gene3D Jelly Rolls 333 489 IPR014710 -
Lapu3g03969 799 PANTHER POTASSIUM CHANNEL AKT1 22 794 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03969 Lapu-Chr3 63069742 63076825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03969 613 688 Ion Channels AT5G37500 29.592 7.10e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03969 K21867 - gmx:100798698 1265.37