Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03965 ATGCTGCCTCACAAGCACACTCTCCTGGTTGTGCCGTCCACGCTCGCTCTCATGCTCATGCTCCTGCTCTTGCTCGCACCAGCAAAAGCAGATCTGGCCGCCGAGCGAGCCGCATTGCTCGCTCTCCGCTCTGCAGTCGGCGGCAGAACCCTCTTCTGGAACGCCACCAGGGAGAGCCCCTGCACATGGGCCGGTGTCCAATGCGAGCGCGACCACGTCGTTGAGCTGCACCTCCCCGGCGTCGCTCTCTCGGGCCAAATCCCGGTCGGAATATTTGGTAATCTTACACAGCTGCGCACCCTCAGTCTCCGGTTCAACGCCCTTCGTGGCACCCTACCTTCAGATCTGGCGGCGTGCGTGAACCTGCGGAACCTGTACATTCAGCGTAACCTTCTCAGCGGCGCAATCCCAGCGTTTTTGTTTGAGTTGCCGGACTTGGTTCGGTTGAACATGGGCTTCAACAACTTCTCAGGCCCACTTCCGAGCGACTTCAACAGCCTAACTCGGTTGAAGACTCTGTTTGTGGAAAACAACCAGCTCTCCGGCCCAATCCCCGACTTGAACAAACTGAGCCTGGATCAGTTCAACGTCTCCAACAACCTCCTCAACGGCTCTGTCCCTCTCAAGCTTCAGACATTCCCTCAGGATTCCTTTCTTGGCAACTCCCTCTGTGGCCGCCCACTCTCTCTCTGCCCCGGAGATATCGCCGATCCTATCTCCGTCGACAACAACTCCAAGCCCCACAACAACAACACCAACAAGTTATCTGCCGGCGCCATTGCGGGGATTGTTATCGGATCGGTCGTCTTTCTTCTGCTCCTCGTCTTCCTCTTCATCTTCCTCTGCAGGAGCAAGACTGCCAAGAAGACCAGCGCGGTCGACATTGCTACCGTGAAACATCCTGAGGCCGACGCCCAGGTTCTTTCTGAGAAGGGGATTCCGGATGTCGAGAACGGCGGTCATGTCAACGGCAATTCTGCGGTGGCTGTGGCTGCGGTTGCTGCCGGGAACAAGGCGGAAGGGAACAGTGCTGGGGCAGCGAAGAAGTTGGTGTTTTTCGGAAATGCGGCTAAAGCGTTTGATTTGGAGGATTTGCTCAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACAGCCTATAAGGCGGTGCTGGAGTCAGGGCCGGTCGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGCGGTGGGAGCTATGGATCATGAGACTTTGGTTCCTCTCAGAGCTTTCTATTTCAGTAGGGATGAGAAGCTCCTTGTTTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTACATGGAAACAAAGGAGCAGGTAGGACGCCACTGAATTGGGAAGTGAGATCAGGCATTGCACTTGGAGCCGCCCGCGGCATTGAGTACCTGCATTCACGAGGGCCTAATGTTTCTCATGGAAATATAAAGTCATCCAACATACTCTTAACCAAATCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTTGTTGGCCCCTCCTCTACTCCCAACAGGGTTGCCGGCTACCGTGCACCTGAGGTGACTGATCCTCGCAGGGTGTCTCAGAAGGCAGATGTGTACAGTTTTGGTGTATTACTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTGCTGAACGAGGAAGGAGTAGACCTTCCCAGATGGGTTCAGTCTGTGGTTAGAGAAGAATGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAAAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCTGTTGATTGTGCAGCACAATATCCTGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAACATAGAAGAATTGCGAAGGTCTAGCTTGAAAGAGGACCAGGACCAAATCCAACATGATCCCGTCAATGATATAGAATTATAG 1977 0.5331 MLPHKHTLLVVPSTLALMLMLLLLLAPAKADLAAERAALLALRSAVGGRTLFWNATRESPCTWAGVQCERDHVVELHLPGVALSGQIPVGIFGNLTQLRTLSLRFNALRGTLPSDLAACVNLRNLYIQRNLLSGAIPAFLFELPDLVRLNMGFNNFSGPLPSDFNSLTRLKTLFVENNQLSGPIPDLNKLSLDQFNVSNNLLNGSVPLKLQTFPQDSFLGNSLCGRPLSLCPGDIADPISVDNNSKPHNNNTNKLSAGAIAGIVIGSVVFLLLLVFLFIFLCRSKTAKKTSAVDIATVKHPEADAQVLSEKGIPDVENGGHVNGNSAVAVAAVAAGNKAEGNSAGAAKKLVFFGNAAKAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHETLVPLRAFYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRNIEELRRSSLKEDQDQIQHDPVNDIEL* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03965 658 SUPERFAMILY Protein kinase-like (PK-like) 371 633 IPR011009 -
Lapu3g03965 658 FunFam Probable inactive receptor kinase RLK902 32 188 - -
Lapu3g03965 658 SUPERFAMILY L domain-like 53 211 - -
Lapu3g03965 658 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Lapu3g03965 658 Gene3D Ribonuclease Inhibitor 147 231 IPR032675 -
Lapu3g03965 658 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Lapu3g03965 658 Gene3D Phosphorylase Kinase; domain 1 332 441 - -
Lapu3g03965 658 PANTHER OS05G0588300 PROTEIN 16 640 - -
Lapu3g03965 658 CDD STKc_IRAK 373 636 - -
Lapu3g03965 658 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Lapu3g03965 658 Pfam Protein kinase domain 370 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03965 658 Gene3D Transferase(Phosphotransferase) domain 1 442 656 - -
Lapu3g03965 658 FunFam Probable inactive receptor kinase At1g48480 442 645 - -
Lapu3g03965 658 ProSiteProfiles Protein kinase domain profile. 367 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03965 658 FunFam pollen receptor-like kinase 1 336 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03965 Lapu-Chr3 63041324 63044617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03965 31 637 Receptor kinase-like Gene Family AT1G48480 65.049 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu3g03965 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03965 - - gmx:100818955 1062.75