Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03963 ATGGCGAGGCCAGAAAGGACGCGTAGAAATAAAAGCCTAGAGACTCTAATGGACTCGGACAAACCACGAATCGGAAGAAATGCGAACCAACTGGGACCCCAGAAGTCCACTCCTGGCTATGGCCTTGAATTCAGTAACCTCTCGTATAGTATCATAAAGAAGCAGAAAAAGGATGGTGTTTGGATAAAAAAAGAAACATATCTTCTTCATGACATCTCTGGCCAAGCAATAAAAGGTGAAATTATGGCAGTCATGGGGCCTAGTGGTGCTGGCAAATCCACCTTTCTTGATGCATTGGCAGGGAGAATTGCTAAAGGGAGTCTAGAAGGATCAGTTAAAATTGATGGAAAACCAATTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCTGCTGAAGTTAGGCTTCCTCCTTCCGTTTCCAGGGGTGAAAAGAAGAAGAGGGTTTATGAACTCCTTGACCAACTGGGCTTACAGAGTGCTACACATACATATATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATCCATAAGCCATCACTTCTGTTTCTTGACGAACCTACCTCAGGCCTTGATTCTACAAGTGCTTACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGAGGAAGCATTGTCCTTATGACCATACACCAGCCTTCATTTCGAATTCAAATGCTCCTGGATCAGATCACCGTCCTTGCAAGGGGAAGATTGATATACATGGGAAAGCCAGATGCACTGCAGGCTCACATGTCCAGATTTGGAAGGCCTGTGCCTGATGGAGAAAACAGTCTTGAGTATCTTCTAGATGTTATAAGTGAATATGATCAAGCAACGGTCGGGCTTGACCCCCTAATTCAATTCCAACGTGATGGCCTCAAACCTGACCCAGCAGCCATGACGCCTGTTCCAAAAACTCCAAGAACACCTTTCAGAAGGAACACCCCTGCATCTAAACATATGATTAGCCTACGCAGCCAAGGATTTACTGCTGGAACACAACAGCCTCATTCCGCACAATTTAGTTATCGCGAGGAGGATGACGATGATGAGAATTTTGATAACTCCCTTGAAAGGAATAGTGTTCCAACGCCAAGGAATATGACCAGTGGTGTTCACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTCTCAGCCAAAGATTTCTCTATCTGGCTTTACCACGGTGTCGTAGGAACGCCGCGGCGCCAACCATCATGGACTCCGGCAAGAACGCCAGGATGGACACCTGGGAAAACACCCATGTCAGGACCAAGAAGTGCAGTTTCCAACCAATATTCTGCAGCTTATCAGTATCCTTATCGCCCCAAACCTCCTGCAGCGGATGGCCAGTCTATGGACTACTCGGCAACTTCATACGCCCCTTCGCTTGAAGGATTTGAGATTGAGGAAGTGCTTGATGAGGCAGACCTTGGATCCAAGTATGCAAACCCATGGCTGCGTGAGGTTGCAGTGCTCTCGTGGCGAACAGCACTAAATGTAATTCGCACCCCGGAACTCTTCCTCTCCCGTGAGATTGTGTTAACTGTTATGGCACTTATCCTGTCCAGCATTTTTGGAAATCTGAGTCATCATTCTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCCTCCAATGATGCGGTCCCATCTTTTATCATGGAGAGGTTCATCTTCAACAGGGAGACCTCCCATAATGCTTACCGTGCTTCTTCATATGTTATTTCTTCCCTCATTGTTTATCTCCCATTTTTCGCGGTTCAAGGCCTCACGTTTGCTGTCATAACCAAAGAGATGCTCCACTTGAATAGCAGTCTCTGGTATTTCTGGCTCACACTTTATGCCTCGCTTATTACTACCAATGCATATGTGATGCTCGTCAGTGCACTCGTGCCTAGTTACATCACAGGGTATGCAGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAGCAAACTCAGATACCCTTGTATTGGAGGTGGCTTCACTATGTTTCTGCAATCAAATATCCATTTGAGGCATTGCTCACAAATGAATTCAAGAACCTCGACTGCTACACAGGAAACAAAGAAGAATTATCCCCCGGACCATTAGGAGACTTAAAGCCCAGCAAACATCATAACACCACTCTGCCGGCTAACTGCTTATTAGGGGTAGATATCTTGTCCTCAATGGATATCAAAATGCAAAACATATGGTTTGACATTTTAATCCTTCTAGCTTGGGGTGTTCTTTACAGGTTGTTCTTCTATTTGGTTTTGAGATTTTACTCCAAGAACGAGAGAAAATGA 2439 0.4473 MARPERTRRNKSLETLMDSDKPRIGRNANQLGPQKSTPGYGLEFSNLSYSIIKKQKKDGVWIKKETYLLHDISGQAIKGEIMAVMGPSGAGKSTFLDALAGRIAKGSLEGSVKIDGKPITTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSVSRGEKKKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDQITVLARGRLIYMGKPDALQAHMSRFGRPVPDGENSLEYLLDVISEYDQATVGLDPLIQFQRDGLKPDPAAMTPVPKTPRTPFRRNTPASKHMISLRSQGFTAGTQQPHSAQFSYREEDDDDENFDNSLERNSVPTPRNMTSGVHPRLASQFYKDFSAKDFSIWLYHGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRSAVSNQYSAAYQYPYRPKPPAADGQSMDYSATSYAPSLEGFEIEEVLDEADLGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSSIFGNLSHHSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFNRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKEMLHLNSSLWYFWLTLYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPLYWRWLHYVSAIKYPFEALLTNEFKNLDCYTGNKEELSPGPLGDLKPSKHHNTTLPANCLLGVDILSSMDIKMQNIWFDILILLAWGVLYRLFFYLVLRFYSKNERK* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03963 812 Gene3D - 42 288 IPR027417 -
Lapu3g03963 812 MobiDBLite consensus disorder prediction 361 403 - -
Lapu3g03963 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 287 IPR027417 -
Lapu3g03963 812 SMART AAA_5 78 278 IPR003593 GO:0016887
Lapu3g03963 812 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Lapu3g03963 812 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Lapu3g03963 812 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 799 - -
Lapu3g03963 812 CDD ABCG_EPDR 42 275 - -
Lapu3g03963 812 FunFam ABC transporter G family member 6 57 284 - -
Lapu3g03963 812 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Lapu3g03963 812 MobiDBLite consensus disorder prediction 326 348 - -
Lapu3g03963 812 MobiDBLite consensus disorder prediction 435 460 - -
Lapu3g03963 812 Pfam ABC-2 type transporter 523 729 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03963 Lapu-Chr3 63025247 63028239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03963 21 400 Calmodulin-binding Proteins AT2G36910 23.454 1.02e-09 60.5