Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03953 ATGGAAGATTTACTCGGCCTTCTAAGAATTCACATCAAGCGTGGTGTCAACCTCGCCATTCGTGATGTCAGCACAAGCGATCCATACGTCGTAGTTAAGATGGACAAGCAGAGGCTCAAGACTCGTGTGATTAAGAAGGATATCAACCCCGAGTGGAATGAAGATCTTACGCTTCCTGTGACAGATCCCTCTTGTCCATTGTTACTGACAGTGTATGATCACGACACTTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGATATCTCACCATATATAGAGGCCTTGAAGATGAACGTGGAAGATCTCCCGAATGGTAGCATAATCACGAGAATACTACCAAGCAGGCAAAACTGCCTGGCGGAGGAAAGTTGCGTGGTTTATGAGAATGGAAAAGTTGTTCAAGATGTTGTCCTAAGATTACGACATGTGGAATGTGGTGAGCTGGAAATTCAATTGGAATGGATTAGTCTTCCTGGCGCCAAGGCTTTGTGA 498 0.4458 MEDLLGLLRIHIKRGVNLAIRDVSTSDPYVVVKMDKQRLKTRVIKKDINPEWNEDLTLPVTDPSCPLLLTVYDHDTFSMDDKMGDAEFDISPYIEALKMNVEDLPNGSIITRILPSRQNCLAEESCVVYENGKVVQDVVLRLRHVECGELEIQLEWISLPGAKAL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03953 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Lapu3g03953 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Lapu3g03953 165 Pfam C2 domain 6 92 IPR000008 -
Lapu3g03953 165 CDD C2_ArfGAP 5 148 - -
Lapu3g03953 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Lapu3g03953 165 Gene3D C2 domain 3 164 IPR035892 -
Lapu3g03953 165 PRINTS C2 domain signature 22 34 IPR000008 -
Lapu3g03953 165 PRINTS C2 domain signature 46 59 IPR000008 -
Lapu3g03953 165 PRINTS C2 domain signature 67 75 IPR000008 -
Lapu3g03953 165 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03953 Lapu-Chr3 62966270 62966980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03953 38 165 C2H2 Transcription Factor Family AT1G70790 55.385 2.56e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03953 - - pvu:PHAVU_002G330200g 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03953 3 62966270 62966980 Lapu4g00253 4 2533033 2535579 PCT