Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03947 ATGTGGATGGTTGGTTACAATGAAGGTGGTGAGTTCGGCATGGCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCAGTGACTTCTCCTAACAACACTCCAAACGCAAACTCTCCATGCTTGAGTCGCATCAATCATGGCAACGATTTCTTCTCACAGTATCACAATCTGGCATCAGTGGCAGATCAAGGCAAAAGAGATTTCAACCCTCCACCTGTAGTGGTGAGTTCAAGGTGGAATCCAACCCCTGAGCAGCTAAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCATCTGCTGAGCAAATCCAACAAATCACGGCACAGCTTAGAAGATTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCTGCTGAGGGTCATCACACCCGTGACTTTGATAGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACTAACTGCAGTACGCTTGCAGAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAGCATAGAAGAAACTTAATGGAGAGGAATGCCACGTGGCACATGATGCAGTTATCTTGTCCTCCCCCTCCTACAGTTTCACCCCACCTCATAAACGCACCTCCTACCATCTCTACTGCTAGCATGACCACCACGCCCTCAGTAACAGCAAGAGTAATGGACCCAAAGCTCATTAAGGCTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAACGGTATATTCCACTTAAGCAGTATCAACACCTACACCCCCGATGATAATTCTGTGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGAACGGGGACGAAAGCAGTGATAACATTAACCACCAAAAAGAGACAGAGGTATCGGTCTCACCAATGAATGCTCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTAA 1086 0.4549 MWMVGYNEGGEFGMADYALNGRKLRPLMPRPVTSPNNTPNANSPCLSRINHGNDFFSQYHNLASVADQGKRDFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDSTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAVAECRTDGWLQFDEGELQHRRNLMERNATWHMMQLSCPPPPTVSPHLINAPPTISTASMTTTPSVTARVMDPKLIKAHDLSFFISPNRENGIFHLSSINTYTPDDNSVESQTLQLFPIRNGDESSDNINHQKETEVSVSPMNAPSQFFEFLPLKN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03947 361 Gene3D - 80 142 - -
Lapu3g03947 361 MobiDBLite consensus disorder prediction 140 160 - -
Lapu3g03947 361 MobiDBLite consensus disorder prediction 143 160 - -
Lapu3g03947 361 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Lapu3g03947 361 CDD homeodomain 83 143 IPR001356 GO:0003677
Lapu3g03947 361 SMART HOX_1 79 146 IPR001356 GO:0003677
Lapu3g03947 361 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 69 355 IPR044555 GO:0003700|GO:0099402
Lapu3g03947 361 FunFam WUSCHEL-related homeobox 4 81 148 - -
Lapu3g03947 361 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Lapu3g03947 361 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03947 Lapu-Chr3 62934214 62937105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03947 1 361 Wox Gene Family AT3G18010 39.433 5.38e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lapu3g03947 Homeodomain 9.8e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03947 3 62934214 62937105 Lapu3g03947 3 62934214 62937105 ECH