Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03941 ATGGCTTCGAGATTCTGGACCCAGGGTGGAAGTGATTCTGAGGAGGAGGAGAGTGATTATGACGAGGAGGTCGAAACGGCGGTTGGTGATTCTGCCAGTCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGACTCCGATGGCCAAAAACGTGTTGTGAGGTCAGCAAAAGACAAGCGTTTTGAGGAGATGGCTTCCACTGTCGATCAGATGAAGAATGCAATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAATTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAGTCGGTGAAGGTTCCCAATCTTTACATCAAGGCACTTGTGATCTTGGAAGACTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAACTCGATGAAGCAGAAGCTGAAGAAGAATAATAAGCAATATGAGGAGTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAGAAAGGAGAAGAGGACAGTGATGATGATTATGAAAGTGATGATGAGATTATTGACCCAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGACGATGAAAAGCCAGATGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGACTTTTAGATAGACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGGGGAAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTCACTTTCCTAACAAAAGTTGCTAAGACGCCTGCACAGAAGCTGGAAATTTTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTGAATGGGTACATGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTTCAGTACCCAAACATAGTGGTTGATGATTCTGTGGAACCAGATGAGAATGAAACTCAGAAAGGTACCGAACATAATGGACCAATTCGGGTGTGGGGAAACTTGGTTGCTTTTTTAGAAAGAATCGATGTTGAGTTTTTCAAGAGCTTGCAATGCATAGATCCTCATACGCGGGACTATGTGGAGAGACTCAGGGATGAACCCGTATTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTGGCCTTGAGAAGGGTTGAGCTCATTTACTACAAACCACAAGAAGTTTATGATGCTATGAGAAAGTTGACGGAGTTGACAGAAGCCGGGGAGAATGGAGGGGAGGCAGGTGAGGAGTCCAAAGAATTTGAGGAACCTAGAGTTCCAACTGCGTTTGTTGTTACCCCAGAGGTTGTGGCACGAAAACCAACCTTCCCTGAGTATAGCAGGACCCTGATGGATGTATTGGTATCTTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGCGCAATGCTCTGTGATATATATCAGCATGCACTTCTTGATGAGTTCTCAATTGCCCGCGATCTGCTGCTTATGAGCCATTTGCAAGAGAGTGTTCAGCATTTAGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCGCAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCCGAGCTCTACTCTGGTGGAAGGGTGAAAGAGTTACTGGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCACATGCACATTAATCTTGAGCTCCTGGAGGCTGTACATCTTGTCTCTGCTATGCTGCTGGAAGTTCCCAACTTGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAAACTTTCCGTCGTTTGCTTGAGGTAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTAAGAGATCATGTTATGGCTGCTACAAGGGTTCTCCGCAAGGGAGACTTCCAAAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTCACCTTCTCTTCATCTTATGAATCCTTGTGCTTGGATCAGCTCACTAAAATTTTTGATCTCTCTGTTCCTCGTACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTTATGCGAGCTGGGACCAGCCAACCGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCTTTGGCATTCCAGTTGACTGAGAAGTTATCTATTCTTGCAGAGAGTAATGAAAAAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTAGATCTGCCTCTAAGGCGGAGAGATGGTCAGGACTATGCTGCCGCCGCTGCAGCTGGTAGTGGAACAACATCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGACAAGGCAGTGGGCGTGCTGGATATGGTGGCGGTGGTGGAAGACCGATGGCATTAGGCCAAGCAGGTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTCATATGGAGCTTCAGGGAGGACTGCTCAAAGGGGTTCAGCATTACGTGGATCCCATGGCGATGTATCTACTCGCATGGTTAGCCTCAAGGGAGCTCGTGCTTGA 2793 0.4554 MASRFWTQGGSDSEEEESDYDEEVETAVGDSASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQENFDKINKQLEKVMRVTESVKVPNLYIKALVILEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKGEEDSDDDYESDDEIIDPEQLRKPEAKSDSEASQYDDEKPDEGPWDQKLSKKDRLLDRQFMKNPSEITWDTVNKKFKEVVSARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGTEHNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPVFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEAGENGGEAGEESKEFEEPRVPTAFVVTPEVVARKPTFPEYSRTLMDVLVSLIYKYGDERTKARAMLCDIYQHALLDEFSIARDLLLMSHLQESVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNLAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLCLDQLTKIFDLSVPRTHSIVSRMMINEELYASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNEKATEARIGGGGLDLPLRRRDGQDYAAAAAAGSGTTSSGGRWQDLSLSQPRQGSGRAGYGGGGGRPMALGQAGGSGYSRGRGTGASYGASGRTAQRGSALRGSHGDVSTRMVSLKGARA* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03941 930 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lapu3g03941 930 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Lapu3g03941 930 Coils Coil 144 171 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 45 63 - -
Lapu3g03941 930 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 925 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lapu3g03941 930 MobiDBLite consensus disorder prediction 841 864 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 30 44 - -
Lapu3g03941 930 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 IPR000717 -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 194 228 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 134 228 - -
Lapu3g03941 930 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 1 63 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 175 193 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 135 154 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 155 174 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 837 930 - -
Lapu3g03941 930 MobiDBLite consensus disorder prediction 12 26 - -
Lapu3g03941 930 Pfam PCI domain 658 786 IPR000717 -
Lapu3g03941 930 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03941 Lapu-Chr3 62893778 62898446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03941 1 930 Eukaryotic Initiation Factors Gene Family AT3G56150 69.305 0.0 1195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03941 K03252 - gmx:100779751 1571.99