Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03939 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGATGATGCACAGGGGGGTACTTCATCAAAGAGCACGAAGTCCAGTGATGGTTCATCTTCATCCACTGCCCCTAAGAAGCTTTCGAATTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCCAGTCCTCCATCTCCCAACCTGGCCAGAGGAGAAAGAATGGACCCATCTGATTCAGTGAGCAGTGGTGTTTTGGATGTTGTGTCTGATTCAGCGAGGCGGGATTCGGAGTCTAGCACGTCTAGGGATCCAGAAGTGGAAGAGGAATATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAAGAAGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGGTACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGGATATTGACTGAGTCAACCTCTGCAAGAATGCCTTCTCTTGTAGATCTGCAAGGAACACCAACCTCAGATGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAATTCAGGAAAAGATTTTGATGTAGTTGTAAATAGTAATTTGGTACACAAGCTTGCAATAATGGTGGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTATAGTCTAAAAGCAACCCTTGGCAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTCAAGGTTTTAGCTGACAGTTTGGGCATACCGTGTCGATTGGTGAAAGGACTGCAGTATATGGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGACGCTACTGGATCACACATTGAATGCGATGGATCTTCCTTTGTAGCCAGTCCTTCATCAAGAGAGCTGGATTCGTCTAATGTAGCTTCATTCAGTAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGAATGTGGAGGGAAAGAATCCGATGTGAGTGGGCTTGCTACAGGCAAGGAATATTTAAAGAAACCATCAAATGAATCCAAAAATACCCCCTGTGCGGAGAAGATCAGAGTGAAGGAACCTTCCAGCAGACCTAACTATCCATACATGCATGGAAGATCTCCTTCTTGGACTGAAGGTATCAGTTCCCCTGCAGCACGTAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAGAATCCTAACTTGGCTCAAAAACTTCACGATGTTTTACTTGAAAGTGGTGTTGTTGCACCTCCAAACTTATTTTCTGAAATGTATCATGGGCAGTTAGGTACTCCAACTGGGACCAATTTTCCAACTGAACAAAAAGATGAGGATAAACAAGCAAGTGTCCAGCAAGAAATTAAGGCTGATGACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAATTTCTTCGGAAAGCAACTCCTGGCAGTCAGCTAGATTCTAAGCCTGTAGATGGCTTAGGAGTTGGTCTTTCTCTTGATACAGGGGAAACTGCTGGACAGAACATACCAACTCAGGCAGAAGCAACTCGGGTAAAGTATGGGAAAAATGTCCCAGTGGCAGCAGCTGCAGCTGCTGCTGCGGCTGTTGTTGCATCTTCTATGGTAGTTGCTGTGACAAAATCAAACACTGACTCAAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGGTAGTCGAAGTGATGGAGATACCGAGGGTGGTGGTTATGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATGCTTTAGGAGAAAACTCAGAAGGTGAGAGAAAATCTGATAGATCAGTGAGTAATGACAGCACAAAATCCGATTCTGCATTGGATGATGTTGCCGAGTATGACATTCCATGGGAGGAAATAAAAATGGGAGAGCGTATCGGACTAGGATCATACGGGGAAGTTTACCGCGGTGAATGGCATGGAACTGAAGTTGCCGTAAAAAAGTTCTTATATCAAGATATCTCTGGCGAATTACTTGAAGAGTTCAAAAGTGAGGTTCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTCGATGCAGCCCGAGGAATGAACTATCTACACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCTCGAATGAAGCATAGTACCTTCCTTTCTTCCAGATCAACTGCAGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCAGTGGGTTTCCAACATCGCCGTCTTGACATTCCAGATGATGTAGACCCTGCCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAGGCTGAGGCCCACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGTTTCTCAAGTGCACAGATCAAGTGCTCAGTCACCACGAGTTGCTGAATTTCCCGCAGGATAG 3000 0.446 MKNILKKLHIMSNQSDDAQGGTSSKSTKSSDGSSSSTAPKKLSNWLHSVSNRQSPSPPSPNLARGERMDPSDSVSSGVLDVVSDSARRDSESSTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGTPTSDDVTWEAVLVNRAADSNLLKLEQEAMKMAANSGKDFDVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATGSHIECDGSSFVASPSSRELDSSNVASFSSGVGSSSEETSECGGKESDVSGLATGKEYLKKPSNESKNTPCAEKIRVKEPSSRPNYPYMHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHGQLGTPTGTNFPTEQKDEDKQASVQQEIKADDNLVPARFLPPLPYHKFLRKATPGSQLDSKPVDGLGVGLSLDTGETAGQNIPTQAEATRVKYGKNVPVAAAAAAAAAVVASSMVVAVTKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQGSRSDGDTEGGGYESKGSGDGEPNALGENSEGERKSDRSVSNDSTKSDSALDDVAEYDIPWEEIKMGERIGLGSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRQCWQTDPRLRPTFAEIMAALKPLQRPITVSQVHRSSAQSPRVAEFPAG* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03939 999 MobiDBLite consensus disorder prediction 372 389 - -
Lapu3g03939 999 Coils Coil 202 222 - -
Lapu3g03939 999 Gene3D Transferase(Phosphotransferase) domain 1 798 982 - -
Lapu3g03939 999 Pfam Ethylene-responsive protein kinase Le-CTR1 141 344 - -
Lapu3g03939 999 ProSitePatterns Protein kinases ATP-binding region signature. 725 747 IPR017441 GO:0005524
Lapu3g03939 999 MobiDBLite consensus disorder prediction 372 439 - -
Lapu3g03939 999 Gene3D Phosphorylase Kinase; domain 1 712 796 - -
Lapu3g03939 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Lapu3g03939 999 MobiDBLite consensus disorder prediction 651 706 - -
Lapu3g03939 999 MobiDBLite consensus disorder prediction 8 60 - -
Lapu3g03939 999 PRINTS Tyrosine kinase catalytic domain signature 942 964 IPR001245 GO:0004672|GO:0006468
Lapu3g03939 999 PRINTS Tyrosine kinase catalytic domain signature 793 806 IPR001245 GO:0004672|GO:0006468
Lapu3g03939 999 PRINTS Tyrosine kinase catalytic domain signature 832 850 IPR001245 GO:0004672|GO:0006468
Lapu3g03939 999 PRINTS Tyrosine kinase catalytic domain signature 879 889 IPR001245 GO:0004672|GO:0006468
Lapu3g03939 999 PRINTS Tyrosine kinase catalytic domain signature 898 920 IPR001245 GO:0004672|GO:0006468
Lapu3g03939 999 SMART serkin_6 719 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03939 999 MobiDBLite consensus disorder prediction 682 697 - -
Lapu3g03939 999 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 980 - -
Lapu3g03939 999 MobiDBLite consensus disorder prediction 84 102 - -
Lapu3g03939 999 CDD STKc_MAP3K-like 725 971 - -
Lapu3g03939 999 FunFam Serine/threonine-protein kinase CTR1 798 981 - -
Lapu3g03939 999 SUPERFAMILY Protein kinase-like (PK-like) 703 970 IPR011009 -
Lapu3g03939 999 ProSiteProfiles Protein kinase domain profile. 719 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03939 999 MobiDBLite consensus disorder prediction 1 102 - -
Lapu3g03939 999 FunFam Serine/threonine-protein kinase isoform 1 710 797 - -
Lapu3g03939 999 Pfam Protein tyrosine and serine/threonine kinase 719 971 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03939 Lapu-Chr3 62876730 62888522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03939 1 985 MAP Kinase Kinase Kinase AT1G73660 63.511 0.0 1146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lapu3g03939 PK_Tyr_Ser-Thr 7.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03939 - - gmx:100778331 1658.27