Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03938 ATGGACCCAACTCCCAACCCTCCCCCTCCCGCCGCCGTCCCCTTCACCGTGGAACCCGACAGTCAGGTGCCCACCGTCGAAGCTAACTCTACTCCCAACCACCCGCCTTACGACGAGATGATATACACAGCTATTGGGGCTCTGAAGGAGAAAGATGGGTCGAGCAAGCGCGCCATAGGAAAGTACATAGAGCAAGTGTACAAGAACCTTCCAACCACTCACCCTGCTCTTCTCACTCACCACCTCAACCGCTTGAGATCGGTTAACCTTCTCGTCATGGTAAAAAAATCCTATAAGCTCCCTGGATCTGACCATGCTCCACCATCTCCTCCCTCTCAAGTCCAAAAGAGCCGTGGTAGGCCTCCCAAACCAAAGCCCCAGCCCACCGCTGACCCTGTCTGGGCTTCACTCGGCCTCTCGGATCCTCCTCAATCTGCTAAAAGAGGCCCGGGTCGTCCCAAAAAGATCATAGGTGTCGGCCCGGGCTCGCCAGTCCCGGCCCGAAGGGGCCGCCCACCTGGCTCCGCAGGGAGATCTAAGTTGTCCAAGAGGGCTGGCCGTCCACCCAAGCCCAAATCCGTGTTGGGGATCGCCAGTGGACTCAAACGACGGGGCCGCCCGCCTAAAGCCAAATCCAACCTCGCCGTAATTCCCTTTGTGGCTCCGGTTGCTCCTGACCAGCCCACGGTGCAGCCCATCATTCCAGCTGCTTCTGTGCCCAACGGGTCTCCCAGGCCCAGAGGACGCCCCAAAAAGATTGCTGCTACTGGTGCTGCTCCACCTCTCACTGTCACTTCCGACGGTGGTGCAGCCCGTGGCCGCGGACGGCCACGTGGAGTCTTGCCTGTGATTAGGGCTGGTCGGCTCCAGAAACTCGCGGTTGGGAGGGCCAAAAATCCTGCAAGAAGGCCCGTGGGCCGCCCAAAGGGATCGACCGCTGCTGCAATCACTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCATGCTTAAGCCGTACTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTTTGGATCTTAAGGCAGCATTGAGGGATGAGACTCAGCAGCAGCCAGAGCCACTGCCGCAGACACAGGTGTATGAAGAGCAATATCCCCCGCAGGTGCCTCAACAGCCACAGCTGCAGCAATTTTTTCAGCCACATACATCAGCTCAAAGCTAG 1257 0.5688 MDPTPNPPPPAAVPFTVEPDSQVPTVEANSTPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKNLPTTHPALLTHHLNRLRSVNLLVMVKKSYKLPGSDHAPPSPPSQVQKSRGRPPKPKPQPTADPVWASLGLSDPPQSAKRGPGRPKKIIGVGPGSPVPARRGRPPGSAGRSKLSKRAGRPPKPKSVLGIASGLKRRGRPPKAKSNLAVIPFVAPVAPDQPTVQPIIPAASVPNGSPRPRGRPKKIAATGAAPPLTVTSDGGAARGRGRPRGVLPVIRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAITAHKAANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALRDETQQQPEPLPQTQVYEEQYPPQVPQQPQLQQFFQPHTSAQS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03938 418 PRINTS AT-hook-like domain signature 242 252 IPR017956 GO:0003677
Lapu3g03938 418 PRINTS AT-hook-like domain signature 115 125 IPR017956 GO:0003677
Lapu3g03938 418 PRINTS AT-hook-like domain signature 145 156 IPR017956 GO:0003677
Lapu3g03938 418 MobiDBLite consensus disorder prediction 232 279 - -
Lapu3g03938 418 SUPERFAMILY "Winged helix" DNA-binding domain 30 109 IPR036390 -
Lapu3g03938 418 SMART AT_hook_2 244 256 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 182 194 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 302 314 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 271 283 IPR017956 GO:0003677
Lapu3g03938 418 SMART AT_hook_2 201 213 IPR017956 GO:0003677
Lapu3g03938 418 Pfam linker histone H1 and H5 family 34 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g03938 418 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g03938 418 MobiDBLite consensus disorder prediction 381 418 - -
Lapu3g03938 418 FunFam Histone H1.2 30 110 - -
Lapu3g03938 418 PANTHER HISTONE H1 13 211 - -
Lapu3g03938 418 MobiDBLite consensus disorder prediction 104 129 - -
Lapu3g03938 418 Coils Coil 316 336 - -
Lapu3g03938 418 CDD H15 31 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g03938 418 MobiDBLite consensus disorder prediction 99 213 - -
Lapu3g03938 418 MobiDBLite consensus disorder prediction 376 418 - -
Lapu3g03938 418 Gene3D - 29 111 IPR036388 -
Lapu3g03938 418 SMART h15plus2 31 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03938 Lapu-Chr3 62863825 62867628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03938 38 103 Single Myb Histone (SMH) Gene Family AT1G49950 42.424 4.90e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03938 - - gmx:547676 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03938 3 62863825 62867628 Lapu3g03938 3 62863825 62867628 ECH