Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03927 ATGGATATTGAGGAGGACATCCGTTCTTTACAGCTCGATTCAGCAGAAGACAATAACGGGGTGGTAAATCCAGATGATGGAAAACCGGAAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCGAAGCAGGAGGTTCAGGCACAAGCTGCTGAGGTTGAGCCAAAAGTGAAAGATAAGGAGATTCCTCATGTCCAAGAAGAAGAAGAAGAAGAGCCTGAGATGACAAAAAGACACTTGAATGTGGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACCGAGACAACAAGGTTTACTATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAACATGATTAGTGGTGCCTCACAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAGCATGTCCAGCTTGCAAAAACGCTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCGAAGATGGTTCCATTTCTAAAGCAATCAGGATACAATGTAAAAAAAGATGTCTTGTTTTTGCCAATATCTGGTCTAGTGGGTACAAACATGCAAACAAGAGTGGACAAAAGTGTTTGTCCATGGTGGAATGGGCCTTGCTTGTTCGAGGCCCTTGATGCCATTGAAGGTCCACCACGAGATCCCAAAGGTCCTTTCAGGATGCCCGTCATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCCATATTCATTGATGAGGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTGTCTGGTGTCGAAGAAGAAGACATGTTAGCTGGGTTTGTCCTGTCTAGTGTTGCTAAACCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATTGATACAAAGACAAAGAAGCCTTTGAAAAAGAAAATTCTCTTTGTGAAGAATGGTGCTGTTGTAGTTTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAAAAGTTCTCTGATTTCCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA 1512 0.4246 MDIEEDIRSLQLDSAEDNNGVVNPDDGKPEEVEKSDKMDEDPKQEVQAQAAEVEPKVKDKEIPHVQEEEEEEPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLVGTNMQTRVDKSVCPWWNGPCLFEALDAIEGPPRDPKGPFRMPVIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDMLAGFVLSSVAKPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPLKKKILFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03927 503 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Lapu3g03927 503 Gene3D Translation factors 393 503 - -
Lapu3g03927 503 CDD eRF3_II 308 389 - -
Lapu3g03927 503 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 57 301 - -
Lapu3g03927 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 502 IPR009001 -
Lapu3g03927 503 MobiDBLite consensus disorder prediction 1 76 - -
Lapu3g03927 503 SUPERFAMILY Translation proteins 301 393 IPR009000 -
Lapu3g03927 503 Gene3D Translation factors 306 391 - -
Lapu3g03927 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 303 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 FunFam Putative translation elongation/initiation factor family protein 395 503 - -
Lapu3g03927 503 MobiDBLite consensus disorder prediction 23 76 - -
Lapu3g03927 503 Pfam Elongation factor Tu GTP binding domain 77 290 IPR000795 GO:0003924|GO:0005525
Lapu3g03927 503 PANTHER TRANSLATION FACTOR 69 501 - -
Lapu3g03927 503 Gene3D - 56 300 IPR027417 -
Lapu3g03927 503 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 305 391 - -
Lapu3g03927 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Lapu3g03927 503 Pfam Elongation factor Tu C-terminal domain 394 502 IPR004160 -
Lapu3g03927 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 312 IPR027417 -
Lapu3g03927 503 CDD EF1_alpha 81 302 - -
Lapu3g03927 503 CDD eRF3_C_III 395 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03927 Lapu-Chr3 62755258 62765603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03927 77 498 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 6.18e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03927 K03267 - gmx:100793653 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03927 3 62755258 62765603 Lapu3g03927 3 62755258 62765603 ECH