Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03924 ATGGCAGGCCCGGATCCATCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTATAAAGCCATTGATACCCACACAGGACAGACGGTTGCGATTAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGAGTAAATTTTACAGCTCTTAGAGAAATTAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGATCGAAATATTTTTCTTTCACCGGCTGATACAAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCTAATAATTTATTGATAGGATCAAATGGACAGCTGAAACTTGCTGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTACAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTCTGGGCTTCAGCTTGTATATTTGCTGAACTCCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATCGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGACATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTGGATCTATTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTTCAGCAGGCACTAGAGCATAGGTACTTCACTTCAGCTCCCCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAGGGAATCTAGGGCTTCTGATTTCGATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCCCAGCAAGCAGACAAGGTTGATGTCAATTTTGTTGATTTCAGACAGACAACTGATGATAATTCAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGAACACATTTAAAAAGAAAATTAGATCTAGAATTTCAACAGCCAGAATGA 1248 0.4151 MAGPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWASACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFTSAPLPSDPDKLPRPAPKRESRASDFDLQEGPTVLSPPRKSRRVMPGRDGFEGNSQQADKVDVNFVDFRQTTDDNSGKNESAPMSVDFSVFGLKPPNRPTINSADRTHLKRKLDLEFQQPE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03924 415 MobiDBLite consensus disorder prediction 362 377 - -
Lapu3g03924 415 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Lapu3g03924 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lapu3g03924 415 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Lapu3g03924 415 MobiDBLite consensus disorder prediction 306 320 - -
Lapu3g03924 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03924 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lapu3g03924 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03924 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03924 415 MobiDBLite consensus disorder prediction 294 401 - -
Lapu3g03924 415 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Lapu3g03924 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lapu3g03924 415 FunFam Cyclin-dependent kinase D-1 5 94 - -
Lapu3g03924 415 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Lapu3g03924 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03924 Lapu-Chr3 62739803 62744289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03924 4 412 Core Cell Cycle Gene Families AT1G18040 74.328 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lapu3g03924 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03924 K02202 - gmx:100776618 794.267