Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03910 ATGCCTGTTGTGACCAACACAACAACACCTACAGTGGCAGAGCACGTCAAATGGAGAAGACCCAGAAACCAATTCAGCCATCACCACCACCACCCCATTTCTGAATCAGATCCAAACTCTCAAATCCCTTCCATAATCCAATCGACTAGGGGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAATACTTCCTCCTCCAATAATGACATCCCCATCATCAATGGCACTGCCCAAAGCAAGAAAAAAAGCAACTTTTCTGCAGCAACCTTCAGAGGGTTGGGGTGCACCGCCGGCGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGAACCAGCAGCAGTGGCAAGAACAAGACTTTCCATGGTGGGGTTCTAGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCGGCAGATACCGCTGCCTCTGTTGATTGTGTTGTGGCCAGAAAGAATGTATCTGCGAGGGGGAAAATTGATGTGGATAAGATTACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACGTTTTCACGCCACGCTCTGCCTCTGACTCTTATGGAACTGCAGCATACTATCGGCACGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGCAGTCTACTAATGGGTGGACAACTAAATTCACATGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGGCAAGACTTCAATTTTGGGATGATACATCAAAGCACCAACTAGATAAAGAGTGCAGCATTTGCCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGGTTTCACAGAAAAATTTCTGCCCAGTATGTAAGCAGCCAGTTGCAGCACGGCACTAA 1128 0.4734 MPVVTNTTTPTVAEHVKWRRPRNQFSHHHHHPISESDPNSQIPSIIQSTRGKSTISSLLLSTFSNNTSSSNNDIPIINGTAQSKKKSNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTSSSGKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHRERSSYVGRRTETFTFLDTDSDVFTPRSASDSYGTAAYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWDDTSKHQLDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVSQKNFCPVCKQPVAARH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03910 375 MobiDBLite consensus disorder prediction 19 44 - -
Lapu3g03910 375 SMART ring_2 327 367 IPR001841 -
Lapu3g03910 375 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
Lapu3g03910 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Lapu3g03910 375 MobiDBLite consensus disorder prediction 121 136 - -
Lapu3g03910 375 MobiDBLite consensus disorder prediction 117 143 - -
Lapu3g03910 375 SUPERFAMILY RING/U-box 326 372 - -
Lapu3g03910 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 32 371 IPR045191 GO:0061630
Lapu3g03910 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 374 IPR013083 -
Lapu3g03910 375 Pfam Ring finger domain 325 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03910 Lapu-Chr3 62628868 62633008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03910 12 282 C3H Transcription Factor Family AT1G73760 41.638 1.58e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03910 - - vum:124831997 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00222 4 2202991 2209332 Lapu3g03910 3 62628868 62633008 ECH
Lapu3g03910 3 62628868 62633008 Lapu3g03910 3 62628868 62633008 ECH