Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03909 ATGGGGAAGAAGAAGAAGAGGGTTTCGTCGAAGGTGTGGTGTTACTACTGCGATCGTGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCACATTATGGTGAAGAAGAGGATGATGTTCCATCAAAAGCTGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGCGGAATGAGGCCACCTCCTTTGGGTACCGGATATCCTCCACGGTCAGCCCTGCCTACAATTCCACCAGTATATAATCCAGCTGTACCCTTGCCACCAAATGCTTGGGTGGTTCCACCTCGACCACAGCCATGGTTTTCACAACCTCCAGCCGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTCCCAGGAACTGTTCCGGCAATGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCCGTCCCAGTTTCACAACCTTTATTCCCTGTTGTTGGAAACAACCATACAACGACTCAAAGTTCAACATATTCTGCTCCACCTCTGCCCTCTAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACACACTCTTCAGTAACAAGTAGTTACCAGGCTATAGGAGTTCCAGGTGCAGTCGCAAGTAATTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTGGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCGCATCTAAGCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTACTCATTGTTTCCTATTTAAAAAGGTACATTCTGAATAG 1176 0.4745 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMRPPPLGTGYPPRSALPTIPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPAPYTQQPLFPVQNVRPPLPGTVPAMQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQSSTYSAPPLPSSVPSVTPVMSTNVPVDTHLSTHSSVTSSYQAIGVPGAVASNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFASKQMSRLYASCFQIQLFTHCFLFKKVHSE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03909 391 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lapu3g03909 391 PANTHER ZINC FINGER PROTEIN 207 1 354 - -
Lapu3g03909 391 SMART c2h2final6 12 35 IPR013087 -
Lapu3g03909 391 SMART c2h2final6 36 59 IPR013087 -
Lapu3g03909 391 CDD SUF4-like 13 92 - -
Lapu3g03909 391 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lapu3g03909 391 Gene3D Classic Zinc Finger 1 66 - -
Lapu3g03909 391 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03909 1 370 C2H2 Transcription Factor Family AT1G30970 60.622 1.98e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g03909 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03909 - - gsj:114413692 705.286