Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03907 ATGAAGAGTGAGCAAGCAGGGAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCGTGGCTTCCCAAGCTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCAATTGATCAGGAAACATTTGCAGAGTATACGGCCAGGACAGCATTTGAACGGCCATTGCTCAGTGGGGTTGCCTATGCACAAAGAGTGGTTAACTCGGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCCCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTTTCTTACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTCCAAAGCCAACAATGGAAGAGCGCATTAAAGCGACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAATCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGATATCACAAACTTTACTGATCCCTTAATCATGTATGGCAAACAAGATGAAGAGGGTGATATGTCCCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACTACGGCATTTTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTATATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGACTTTCATGAAATGGCGAAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCGCAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGGCACAGAATTGAGTTCAACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGAATGGCTCTCATAGCATTGATAAATGAGGTGCTTGACCGAGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCCTTTGACATTCGATCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGACATTGTTATGGGAGATCCGGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATCTATCTGAAAATAGGATGTCCACAATGAATGGAAAAATTGAGACTTTTCTAAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGTGGTGGTTATAATTTCAAAACTCTAAGTGGATATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTTAAGCATCTGATCGCTGATGAAGAATTTTTCTTTGATGATTCAGTTAAAAAGGTGGCCAGTGAATCTTATGAGCAAGTCACCTTGATGGTCAGTGTGGAGGACACTGGAAATGGAATCCCTTTCTTAGCCCAAGATAAGATTTTCATGCCTTTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATCGGCTTGAGTATAAGTAAGTGTCTGGTTGAACTAATGGGTGGTGAGATAAGTTTTATAAGCCGACCCCAGGTTGGGAGCACATTTTCATTTACTGCTGATTTTGGAACAATTAAGAAAAATTCAATAACTGACATGAAGAAGCATAATTTGGAAGACCTGCGTTCCAGCTTTAGAGGTTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTGACTAGATACCATCTGAAGAGACTGGGGATTCAGGCCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCATGGATTCGTGGAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAACGGGCATATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATGCTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTCATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAGCAAGTTCTGGGAACGGGGAAGAAGAGGCAGCTTGGAAAAGACACGGGTTCCAATTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATATTAGTGGTTGATGATAATAGGGTAAATAGGAGGGTCGCTGCAGGTGCATTGCAAAATTTTGGAGCTCATGTGACGTGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAGTTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGGTTTCAAGCAACTGGGAAAATTCGGGATATGGAGAGAAAGGCAAATGAGCGTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAATGAGTATCATTTACCTATATTGGCCATGACAGCGGATGTAATTCAAGCAACATACGAGAAATGCGTGGAATGTGGAATGGATGGTTATTATCAGAACCAGTACGGTGCTGTTCCTACCAGTAAGGATTCTATTCAGAAGGAAATGGAGAGCACCGGAGACACCACTGGAGTTGGGGTTGCTGCTGCTGGTGATGGTGATGGCGGCACTACAACACAAGTCATGGCGGAAGATTATGATATCAGCAACAGAAACAGCAGTGGAGAGAAGCAGAAGAAAGGAATAATAGAGAAAATAAAGGAGAAGCTTCCTGGAACTGGAACACATCAACACAAGTAG 3132 0.4195 MKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHEMAKLKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRMSTMNGKIETFLNGRSDEVVHVSSGGYNFKTLSGYEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFLAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWIRGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSNFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHVTCAESGKIALEMLQLPHSFDACFMDIQMPEMDGFQATGKIRDMERKANERLMNGECGEGNGWKNEYHLPILAMTADVIQATYEKCVECGMDGYYQNQYGAVPTSKDSIQKEMESTGDTTGVGVAAAGDGDGGTTTQVMAEDYDISNRNSSGEKQKKGIIEKIKEKLPGTGTHQHK* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03907 1043 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Lapu3g03907 1043 CDD HATPase_EvgS-ArcB-TorS-like 483 661 - -
Lapu3g03907 1043 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 658 IPR036890 -
Lapu3g03907 1043 PANTHER TWO-COMPONENT HISTIDINE KINASE 16 962 - -
Lapu3g03907 1043 CDD REC_hyHK_CKI1_RcsC-like 844 961 - -
Lapu3g03907 1043 FunFam Histidine kinase 4 338 429 - -
Lapu3g03907 1043 Pfam CHASE domain 96 276 IPR006189 -
Lapu3g03907 1043 Gene3D - 44 96 - -
Lapu3g03907 1043 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Lapu3g03907 1043 PRINTS Bacterial sensor protein C-terminal signature 623 641 IPR004358 GO:0016310|GO:0016772
Lapu3g03907 1043 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Lapu3g03907 1043 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Lapu3g03907 1043 SMART REC_2 842 976 IPR001789 GO:0000160
Lapu3g03907 1043 CDD HisKA 366 427 IPR003661 GO:0000155|GO:0007165
Lapu3g03907 1043 Gene3D CHASE domain 97 312 IPR042240 -
Lapu3g03907 1043 Coils Coil 416 436 - -
Lapu3g03907 1043 ProSitePatterns Dehydrins signature 2. 1029 1036 IPR030513 -
Lapu3g03907 1043 SMART CHASE_2 93 278 IPR006189 -
Lapu3g03907 1043 ProSiteProfiles Histidine kinase domain profile. 373 663 IPR005467 -
Lapu3g03907 1043 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 432 IPR036097 GO:0000155|GO:0007165
Lapu3g03907 1043 Pfam His Kinase A (phospho-acceptor) domain 366 431 IPR003661 GO:0000155|GO:0007165
Lapu3g03907 1043 Gene3D - 430 666 IPR036890 -
Lapu3g03907 1043 MobiDBLite consensus disorder prediction 973 1043 - -
Lapu3g03907 1043 Gene3D - 681 822 - -
Lapu3g03907 1043 ProSiteProfiles Response regulatory domain profile. 688 818 IPR001789 GO:0000160
Lapu3g03907 1043 MobiDBLite consensus disorder prediction 1014 1043 - -
Lapu3g03907 1043 SMART HKATPase_4 478 663 IPR003594 -
Lapu3g03907 1043 SUPERFAMILY CheY-like 841 962 IPR011006 -
Lapu3g03907 1043 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 661 IPR003594 -
Lapu3g03907 1043 ProSiteProfiles CHASE domain profile. 93 305 IPR006189 -
Lapu3g03907 1043 Pfam Response regulator receiver domain 844 912 IPR001789 GO:0000160
Lapu3g03907 1043 ProSiteProfiles Response regulatory domain profile. 843 979 IPR001789 GO:0000160
Lapu3g03907 1043 FunFam Histidine kinase 4 97 312 - -
Lapu3g03907 1043 Gene3D - 823 978 - -
Lapu3g03907 1043 Gene3D - 338 429 - -
Lapu3g03907 1043 SUPERFAMILY CheY-like 684 819 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03907 Lapu-Chr3 62585553 62595215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03907 7 966 Histidine Kinase Gene Family AT2G01830 69.588 0.0 1331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g03907 HATPase_c 6.8e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03907 K14489 - gmx:100818481 1676.76