Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03905 ATGGGGAAGCATGAACTGGGTTTTGGAGGTCCCTTCTTTTATGATCTTGTTTTTGTTCTTTCTTTCCTTGTTATCTCGGCTAGGTGTCAAGATGCACAGATAATGGAAATTCTACAGAACACGATCAATGTCCCTGTTAGCTTCGAATGGATAGGTCAAGATGTATGCAAATGGAAACATGTTGTATGCGATTCATCTAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCAGGGATCTCTCCCCAACGAACTTGTGAAGTTAACAGCCTTGACACGTTTTGAGTGTCAAAACAATAATCTTACAGGCCCATTCCCATACCTCTCAAAATCCTTGCAGAAGTTGATAATCCATGACAACAACTTTGGCTTCTTTCCCGACGATTTCTTCGCGGGCATGAGCAGTTTGCAAGAGGTGAGAATTGATGACAATCCGTTCTCTCAATGGCACATTCCTAACACTCTCAAGGACTGTGTCGCACTCCAAACTTTTAGTGCTCAGAGTGCTGGCCTTGCTGGGACAATCCCAGACTTTTTTGGTAGAGGTGGTCCTTTTGCAGGTTTGGTTCTCTTAGCTTTATCAGATAATTTTCTAGAAGGTGCATTGCCTGCAAGCCTGTCGGGTAGTTCAATAGAGAATCTTTTGGTGAATGGACAGAATAGCAACTCTAAACTCAATGGCACCCTTGCGGTGTTAGGCAACATGAAATCTTTGAGGCAAATTTGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAGATATGTCAGATCATGATCAACTCTATGATGTGAACTTAAGGGATAACCAATTGACTGGTGTTGTTCCTCCCTCCCTAATTGCTCTACCAAGTCTAAAGTTCGTGAACTTAACCAATAACCTTCTCCAAGGATCCCCTCCAATGTTCAAAGATGGGGTAGGAGTGGACAATAACATGGATAGGGGGAGAAATCAGTACTGCACAAACGTGGTGGGGCAATCATGTAGTCCCCTTGTAAATGCTTTACTATCTGTTGTTGAACCTTTGGGGTATCCTCTAAAACTTGCTCAGAGTTGGCAGGGTAACGATCCTTGTGCTAATAGATGGACAGGTATAGTTTGCTCTGGGGGAAATATTTCGGTTATCAACTTTCAGAACATGGGTTTGTCTGGCACTATCTGTCCATGTTTTGCCGACCTTACTTCAGTGACAAAATTATTTCTTGATGACAACAATCTCACAGGTACTATACCAACGGAACTTGCTAGTTTGCCTCTTTTGGAAGAGTTAGATGTTTCCAATAATCATATTTATGGCAAAGTGCCATCATTTCGTAAAGACGTGGTTCTTAAATATGAAGGGAATCCTGATATTGGAAAGACTGAACCAACTGAGTCGAGTTCTGGAGGCAACCATGAAAATAATAATAGTAATAATAATACTGCAGTAATTGTTGTAGTTACCGTGGTGGTTGTGATTTTACTTGTTGTTGGGGTTCTAATACTTGTTAAATTTAGGAGAAAGTGGAAGTATGTGGGTAAGGTTCGAAACCCAAACACGACTGTGGTACCTCCCCGTTATGGGGATGGAAATTTTTCAAAGATAAGTGGAGGTCATGGGGAAGGAAATTTTAGCTCGTTATTAAGTCCTACTCATAGTGCTTATCAGGGAGAGTCTAATAACATGTTAATTTCAATTCAAATTTTGAGAGAAGTTACCAACAATTTTAGTGAGGAAAACATATTGGGAAAGGGGGGGTTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAAAATTGCAGTGAAAAGGATGCAATCAGCAGGATTAGTGGATCAAAAAGGGCTGAGTGAGTTCACGTCTGAAATCGCAGTGCTTACCAAGGTTCGACACAGAAATTTGGTTGCTCTCTTGGGGTTTTGCTTGGATGGTAGTGAGAGACTTCTTGTGTATGAATGCATGTCTCAAGGTGCTCTTAGTAAACATTTGATCAATTGGAAGAGTGAAGGGATAAAACCACTTGAATGGAAGACAAGACTCAGTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAAATTTTTATTCACAGGGATCTCAAACCATCCAACATTCTGCTCGGGGATGATATGCGTGCCAAAGTATCAGACTTTGGATTGGTTCGACTTGCTCCTGAAGGGAAAACCTCATTTCAAACTAGACTGGCAGGAACTTTTGGGTACATGGCACCAGAGTATGCAGCTACCGGAAGACTCACAACAAAGGTTGATGTGTATAGTTTTGGAGTGATTCTTATGGAGATGATAACAGGAAGGAAAGCACTTGATGATAGCCTACCAGAAGAGAACATCCACCTTGTTTCATGGTTCCGCAAGATGCTAATAAACAAAGATTCATTCCAAACAATCATTGATCCAACAATTGAAGTTGATGCAGAAACCTTGGTGAGTGTTAGAACTGTTGCAGGATTAGCAGGACATTGTTGTGCAAGAGAGCCTTACCAGCGTCCTGACATGAGTCATGTGGTGAATGTGTTGTCACCTCTTGTTGAGGTGTGGAAGCCTTCAGAAACAACTGTTGATGACATATATGGAATTGACTATGATATGTCATTACCAGAAGCACTCCAAAGGTGGAAACATTTTGAGGGAAACAGCAGCACCTTTGACTTAACTTCTTTTTCATCAACACATCTTAATGGAAACAACACAAAGTCAAATCCACAAACTCACTCTTCTGTA 2748 0.413 MGKHELGFGGPFFYDLVFVLSFLVISARCQDAQIMEILQNTINVPVSFEWIGQDVCKWKHVVCDSSKRVKAIQIGNQNLQGSLPNELVKLTALTRFECQNNNLTGPFPYLSKSLQKLIIHDNNFGFFPDDFFAGMSSLQEVRIDDNPFSQWHIPNTLKDCVALQTFSAQSAGLAGTIPDFFGRGGPFAGLVLLALSDNFLEGALPASLSGSSIENLLVNGQNSNSKLNGTLAVLGNMKSLRQIWANGNSFTGPIPDMSDHDQLYDVNLRDNQLTGVVPPSLIALPSLKFVNLTNNLLQGSPPMFKDGVGVDNNMDRGRNQYCTNVVGQSCSPLVNALLSVVEPLGYPLKLAQSWQGNDPCANRWTGIVCSGGNISVINFQNMGLSGTICPCFADLTSVTKLFLDDNNLTGTIPTELASLPLLEELDVSNNHIYGKVPSFRKDVVLKYEGNPDIGKTEPTESSSGGNHENNNSNNNTAVIVVVTVVVVILLVVGVLILVKFRRKWKYVGKVRNPNTTVVPPRYGDGNFSKISGGHGEGNFSSLLSPTHSAYQGESNNMLISIQILREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMQSAGLVDQKGLSEFTSEIAVLTKVRHRNLVALLGFCLDGSERLLVYECMSQGALSKHLINWKSEGIKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDSLPEENIHLVSWFRKMLINKDSFQTIIDPTIEVDAETLVSVRTVAGLAGHCCAREPYQRPDMSHVVNVLSPLVEVWKPSETTVDDIYGIDYDMSLPEALQRWKHFEGNSSTFDLTSFSSTHLNGNNTKSNPQTHSSV 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03905 916 SUPERFAMILY L domain-like 29 304 - -
Lapu3g03905 916 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Lapu3g03905 916 MobiDBLite consensus disorder prediction 455 472 - -
Lapu3g03905 916 SUPERFAMILY L domain-like 334 439 - -
Lapu3g03905 916 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Lapu3g03905 916 FunFam receptor protein kinase TMK1 535 649 - -
Lapu3g03905 916 Pfam Protein kinase domain 572 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03905 916 CDD STKc_IRAK 577 851 - -
Lapu3g03905 916 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Lapu3g03905 916 Gene3D Ribonuclease Inhibitor 29 329 IPR032675 -
Lapu3g03905 916 FunFam Receptor-like kinase TMK4 29 327 - -
Lapu3g03905 916 SUPERFAMILY Protein kinase-like (PK-like) 550 848 IPR011009 -
Lapu3g03905 916 Gene3D Transferase(Phosphotransferase) domain 1 650 866 - -
Lapu3g03905 916 ProSiteProfiles Protein kinase domain profile. 571 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03905 916 Gene3D Phosphorylase Kinase; domain 1 541 648 - -
Lapu3g03905 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Lapu3g03905 916 MobiDBLite consensus disorder prediction 450 472 - -
Lapu3g03905 916 PANTHER OSJNBA0070M12.3 PROTEIN 17 897 - -
Lapu3g03905 916 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Lapu3g03905 916 Pfam Leucine rich repeat N-terminal domain 52 64 IPR013210 -
Lapu3g03905 916 FunFam receptor protein kinase TMK1 650 867 - -
Lapu3g03905 916 SMART serkin_6 571 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03905 Lapu-Chr3 62570875 62573931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03905 71 848 Receptor kinase-like Gene Family AT5G07280 31.856 5.35e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lapu3g03905 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03905 K00924 - gmx:100788903 1431.39