Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03900 ATGGGGGGCGAGAATCTTTCACCAAAGGAAAGGAGTAGAGATTGGGTTGGAGTTCTCATGAACAGCAGCTTTGGTTATTGTGATTACCACCATGACCTTCGATCTAATGAGAAGAATGTGTTTTGCGTAGACTGTGCACTTAGGATGTGCAGGCACTGTAAGGAAGCTCATTCCCTACATAGAAGGTTTCAGATTTACAAATATTCCTATCAGGATGTCTTCCGCCATGCCGAACTGCAGAAGTATTTTGATTGCTCAAAAATTCAGACTTACATCTCCAATAATGAAAGGATTGTGCACCTCAAACCTCGGCCTTCAATCAACAAATCTAAATCTGCTGATCTAAGCCCCGATTCTAAATCCAAAGAACCCAGCATCAGACTGAAGTCTGGAGGCAAGTGTGAAGAATGTGGAAAACACTTGCAAGATGAACGCAACCGCTTCTGCTCCATTACATGCAAGATCGCAGTGCTTCCAGTGGAGACTGGAAACCAAAGTGCTAGAGGCATGATCACTCCAAAATCTGAAGGCATTGACTTTATAATGAATGATAACCATAATTCAGAACCGGAGTCATCCATCTCTGAAGCTGAGCCATATGGGTGGGTTGAAGTTGTGAATTTCAGAAAGCGCCCAAGGAAAAGTACCCCTCAGAGGCCTGTCTTTGTTTTCACTACGTAG 681 0.4361 MGGENLSPKERSRDWVGVLMNSSFGYCDYHHDLRSNEKNVFCVDCALRMCRHCKEAHSLHRRFQIYKYSYQDVFRHAELQKYFDCSKIQTYISNNERIVHLKPRPSINKSKSADLSPDSKSKEPSIRLKSGGKCEECGKHLQDERNRFCSITCKIAVLPVETGNQSARGMITPKSEGIDFIMNDNHNSEPESSISEAEPYGWVEVVNFRKRPRKSTPQRPVFVFTT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03900 226 Pfam PLATZ transcription factor 67 155 IPR006734 -
Lapu3g03900 226 ProSiteProfiles Zinc finger B-box type profile. 22 65 IPR000315 GO:0008270
Lapu3g03900 226 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 11 177 - -
Lapu3g03900 226 SMART bboxneu5 22 65 IPR000315 GO:0008270
Lapu3g03900 226 MobiDBLite consensus disorder prediction 102 130 - -
Lapu3g03900 226 MobiDBLite consensus disorder prediction 115 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03900 Lapu-Chr3 62500912 62503648 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lapu3g03900 PLATZ 6.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03900 - - gmx:100815813 422.165