Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03886 ATGAGTAGAATTTCCTCGGAGGAGAAGGTTTTGCGTCAATTTCCGTCAAGTATTAGGGTTCTGGTCATTGACAGTGACCCTACAGTTCTTGAATTTATCAAGAAAATATGCCATCAATATTGTTATCAAGTTATTACATGCACGGAGTCGATACCTGGTAAGAATATTTTGCAGGAAAATAAAGTGAGTATTAATTTGGTAGTCATGGAGGTTCATATGCCAAAGATGGATGGCTATGAATTCCTACTTGTCAACAGAGAAACGAACGTTCCTATTATCATGATGTCTTCGGATGATAACAAGAGTTCTGTAATGAAGTCTATTAAACTTGGAGCTTGTGATTACTGGATTAAGCCTTTGAATGAGGATCGACTCCAGATTATGTGGACACATGTTGTTAGGAAGTTCATGCGTGAAAATAAGATACAAAAAGATATTGGTGGATTGAAAGACGATAATCAGAAAAGAATTATTAGTGGTAATGCTGAATTTGTTATTTCTCCTGCAGTTGAAAGTTCCAGAGAAGTTGACAGTGTTGGTGAATCTGAGAAACCTGGTTCACCTTCGAGAAAGAAGTGTCGTATAGTATGGTCATCAGAACTGCATCGTGAATTTGTCAAAGCTGTGAATCAACTTGGACTTGCTAATGCTGTGCCAAACAAAATCCTTGAACTCATGAATACGCCCGGTTTGACAAGAAACCATGTTGCTAGTCATTTGCAGAAATATAGAAATACTTTGAAGACGAAATCTAGTAGAGAGAAAGAGAGACCAGCACAAGCACAGCATGAGATGTCAAGGACTATAGAACCTGCAGGAGTACATCTTCATCCCTGTCTCACAGGTAACATGGTACCCAAAAGAGAGTACCAATCGGCCTCAGATATACAAGTGCATAACCATTTTCGTGAAGAAGAAGCTTTGGATTTGGCACATGGTCACCCCCTGGCTACCTATCCTAGTACTGCTATTCTGCAGAATTTTCCACAGTCCATGGGGACTCTGGATGATGCATCTATGAATGGAGTATGGTCTCCATATAATACAGTGATAGCTGAAAATCAGGCTATGCCTCAGAGAAACAGTATGTCCATGGATACATTGCAGCAGCAACAGCAACAAATGCAACAACTCCTGATGCATAATCAAATCCATCCGATCAACTTGCACTCACCTTTTAGTTTCTGA 1188 0.3973 MSRISSEEKVLRQFPSSIRVLVIDSDPTVLEFIKKICHQYCYQVITCTESIPGKNILQENKVSINLVVMEVHMPKMDGYEFLLVNRETNVPIIMMSSDDNKSSVMKSIKLGACDYWIKPLNEDRLQIMWTHVVRKFMRENKIQKDIGGLKDDNQKRIISGNAEFVISPAVESSREVDSVGESEKPGSPSRKKCRIVWSSELHREFVKAVNQLGLANAVPNKILELMNTPGLTRNHVASHLQKYRNTLKTKSSREKERPAQAQHEMSRTIEPAGVHLHPCLTGNMVPKREYQSASDIQVHNHFREEEALDLAHGHPLATYPSTAILQNFPQSMGTLDDASMNGVWSPYNTVIAENQAMPQRNSMSMDTLQQQQQQMQQLLMHNQIHPINLHSPFSF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03886 395 Gene3D - 16 147 - -
Lapu3g03886 395 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 315 IPR045279 GO:0009736
Lapu3g03886 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Lapu3g03886 395 Pfam Myb-like DNA-binding domain 197 244 IPR001005 -
Lapu3g03886 395 SUPERFAMILY Homeodomain-like 190 248 IPR009057 -
Lapu3g03886 395 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
Lapu3g03886 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 248 IPR017930 -
Lapu3g03886 395 Gene3D - 189 249 - -
Lapu3g03886 395 SUPERFAMILY CheY-like 16 164 IPR011006 -
Lapu3g03886 395 CDD REC_typeB_ARR-like 20 133 - -
Lapu3g03886 395 FunFam Two-component response regulator 188 251 - -
Lapu3g03886 395 SMART REC_2 18 129 IPR001789 GO:0000160
Lapu3g03886 395 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03886 Lapu-Chr3 62362882 62364697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03886 14 246 Response Regulator Gene Family AT4G16110 40.310 1.41e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu3g03886 Response_reg 1.9e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03886 - - vum:124828058 396.356