Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03885 ATGGCCCAAATTGCTTCTCCTGTAATCGAGACATCTCTTCAATTTCCATCAACTATTAGCGTCCTTGCCATTGACACCAACCTCGCAGTTCTTGAATTCATCAAGAGCATGTGCAACCAATGTGGTAATCAAGTGATGTCTTTGGATGATAGTAGGCCTTCAGTAGCGAAGGCTTTTATACTTGGAGCTTGTGATTATTGGATTAAACCCTTGTATAAGTATCGGTTCGAGATTATGTGGACGCATGTATTCAGGAAGTACATAAGTGAAGATAAGAGGCAAAAAAATATTGGTCTCTCGGAAGATGATAATAGAATAAGAGGGAGAAGTGATAATTCTGAATTTGCTTCATCTATTGTTGATAGGAGCAATAGCAATTTTAGAGAAGCAGATGATGTTGATGAATCAAGGAATAGTAATCCACCCTCCACAAAGAAGAATCGTGTAGTGTGGTCACCAGAACTCCATCTTGTATTTCTCAAAGCTATCGATCAAATTGGAATTGAAAATGCCGTGCCAAAGAAAATTCTTGAAGTCATGAATATCCCTGGTTTGGAAAGAGGACATGTTGCTAGTCATTTGCAGAAATACAGAAAATTTTTGAAGGAGAGAGAGAGAAAGAGACAGCAGCAAAATGACATGTCATTGGCTTCAGTGAACATAGAACCAAGGATGCGTGCAGATGGAAGAATCCACTTGCAACCTTTTCCTGCTACTGCACAGACAGAACAAGCTTTGGCACATGATCATCCTTTTGCCACCTTTCCTAACACTGTCACTACCGATAATTTTTCACAGTCCGTAGGAACTCTAGATGATGCTTCTATGTATAGATTTTGTTCTCTATCTGATAGAGTGTTGGTTGACAATCCGGCTATGATTCAGAGAAACAATATGCAGCAGCCAATGATGCATCTTCATCAACTTCATCCAATCAACTTTCAGTCATCTTCTATGATAATGTCTGCAAATCCAGATTCTGTCCCTCAGAATTCCAACTTTGGCATGAACATGGATAATGGTTGCATGAACATGGATAATGCCTACATCAGAGCTAGTCATTCCGTCAGTCGAGGAGGAGAGGTCATCGTGTATGCTCGCTGTCGCAAGAAGCAGAGAATGGGCATGGTGGAGTGA 1137 0.4055 MAQIASPVIETSLQFPSTISVLAIDTNLAVLEFIKSMCNQCGNQVMSLDDSRPSVAKAFILGACDYWIKPLYKYRFEIMWTHVFRKYISEDKRQKNIGLSEDDNRIRGRSDNSEFASSIVDRSNSNFREADDVDESRNSNPPSTKKNRVVWSPELHLVFLKAIDQIGIENAVPKKILEVMNIPGLERGHVASHLQKYRKFLKERERKRQQQNDMSLASVNIEPRMRADGRIHLQPFPATAQTEQALAHDHPFATFPNTVTTDNFSQSVGTLDDASMYRFCSLSDRVLVDNPAMIQRNNMQQPMMHLHQLHPINFQSSSMIMSANPDSVPQNSNFGMNMDNGCMNMDNAYIRASHSVSRGGEVIVYARCRKKQRMGMVE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03885 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 202 IPR017930 -
Lapu3g03885 378 FunFam Two-component response regulator 142 205 - -
Lapu3g03885 378 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 117 344 IPR044841 GO:0003700|GO:0006355
Lapu3g03885 378 Gene3D - 143 203 - -
Lapu3g03885 378 MobiDBLite consensus disorder prediction 127 141 - -
Lapu3g03885 378 MobiDBLite consensus disorder prediction 127 147 - -
Lapu3g03885 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 146 199 IPR006447 GO:0003677
Lapu3g03885 378 Pfam Myb-like DNA-binding domain 148 198 IPR001005 -
Lapu3g03885 378 SUPERFAMILY Homeodomain-like 144 202 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03885 Lapu-Chr3 62353723 62358390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03885 45 214 Response Regulator Gene Family AT3G16857 37.755 5.01e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g03885 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03885 - - var:108339502 257.684