Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03884 ATGGCCCAAATTGCTTCTCCTGTAATCGACACATCTCTTCAACTTCCACCAACTATTAGTGTCCTTGCCATTGACACTAACCTCGCAGTTCTTGAATTAATCAAGAGCATGCGCAACCTCTATGGTTATCAAGTTATGGCATGCTCTGAATCTCTATCTGCTCTGAATGTTTTACGTGAAAGAAAAGTGCGCATTGATTTGATACTCATAGAGGCTCATATGCCAATGATGGACGGCTATGAATTCCTACAATTTGTTAAACAAGAAGGACTTAATATTCCTCTCATCATGATGTCTTTGGATTATAGCAGGCCTTCAGTAGCGAAGGCTTTAAGACTTGGAGCTTGTGATTATTGGTTTAAACCCTTGTGTGAGTATCAGTTCAATATTATGTGGACGCATATGGTATTCAATAAGTACATAAGTGAAGATAAGAGGCAAGAACATATTGGTCGCCCGGAAGATGATGATAGAATAAGAGGGAGAAGTGGTAATTCTGAATTTGCTTCATCTATTGTTGATAGGAGCAATAGCAATTTTAGAGAAGCAGATGATGTTAATGAATCAAGGAATAGTAATCCACCCTCCACAAAGAAGAATCGCGTAGTATGGTCACCAGAACTACATCTTGTATTTCTCAAAGCTATCGATAAAATTGGAATTGAAAATGCCGTACCAAAGAAAATTCTTGAAGTCATGAATATCCCTGGTTTGGAAAGAGGACATGTTGCTAGTCATTTGCAGAAATACAGAAAATATTGGAAAGAGAGAGAGACAAAGAGACAGCAGCAAAATGACATGTCATTGGCTTCAGGGAACATAGAACCAAGGATGCATGCATCTGGAACAATCCACTTGCAACCTTTTCCTGCTACTACACAGACAGAACATGCTTTGGCACATGATCATCCTTTTGCCACCTTTCCTAACACTGTCATTACCGATAATTTTTCACACTCCGTGGGAATTCTAGACGATGCTTCTGTGTATAGATTTTGTTCTCTGTCTGATACAGGATTGGTTGACAATCCGGCTATGCTTCAGAGAAATAATATGCAGCAGCCAGTGATGCATCATGATCAAATTCATCCAATCAACTTTCAGTCATCTTCTATGTTAATTTCTGGAAATCCAACTGCTGTCCCCGAGAATTACAACTTTGGCATGAACATTGATAATGGTTTAATACCACCTCAATCTATCCAAGGTGGAAACAACATAGGTGAAGTCATTCTCAACCAATATACTGCTAGAGCTTCCATTTATTATCCACAGTTTCAAAATGCAGGTTTGCCAAGTAGTGCTGTCAGATCTTTTGCTGCAAGCGATTTTAGTTTCCCAAATCTCTCCACAGATATTGATGATAAAACAACCAATGGATAA 1383 0.3883 MAQIASPVIDTSLQLPPTISVLAIDTNLAVLELIKSMRNLYGYQVMACSESLSALNVLRERKVRIDLILIEAHMPMMDGYEFLQFVKQEGLNIPLIMMSLDYSRPSVAKALRLGACDYWFKPLCEYQFNIMWTHMVFNKYISEDKRQEHIGRPEDDDRIRGRSGNSEFASSIVDRSNSNFREADDVNESRNSNPPSTKKNRVVWSPELHLVFLKAIDKIGIENAVPKKILEVMNIPGLERGHVASHLQKYRKYWKERETKRQQQNDMSLASGNIEPRMHASGTIHLQPFPATTQTEHALAHDHPFATFPNTVITDNFSHSVGILDDASVYRFCSLSDTGLVDNPAMLQRNNMQQPVMHHDQIHPINFQSSSMLISGNPTAVPENYNFGMNIDNGLIPPQSIQGGNNIGEVILNQYTARASIYYPQFQNAGLPSSAVRSFAASDFSFPNLSTDIDDKTTNG* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03884 460 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 295 IPR045279 GO:0009736
Lapu3g03884 460 ProSiteProfiles Response regulatory domain profile. 20 136 IPR001789 GO:0000160
Lapu3g03884 460 Gene3D - 196 256 - -
Lapu3g03884 460 SMART REC_2 19 130 IPR001789 GO:0000160
Lapu3g03884 460 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Lapu3g03884 460 CDD REC_typeB_ARR-like 21 136 - -
Lapu3g03884 460 SUPERFAMILY Homeodomain-like 197 255 IPR009057 -
Lapu3g03884 460 FunFam Two-component response regulator 195 258 - -
Lapu3g03884 460 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Lapu3g03884 460 MobiDBLite consensus disorder prediction 179 200 - -
Lapu3g03884 460 Gene3D - 18 152 - -
Lapu3g03884 460 Pfam Response regulator receiver domain 21 123 IPR001789 GO:0000160
Lapu3g03884 460 SUPERFAMILY CheY-like 18 135 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03884 Lapu-Chr3 62349395 62351354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03884 14 378 Response Regulator Gene Family AT2G25180 31.183 6.12e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g03884 Response_reg 2e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03884 - - var:108339502 436.032