Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03880 ATGGTGACAAGAAGAAAGCTCCTGAACTTGCTAGCAATCCTAAACGTTTCTGACCTACTTCCTCACCACGTCAATGCATTTAAGCCCTTTTCCAAAACCCCCAAAACCCTTAGGGTTTATTACGGAACCCAATCATCCAAACTCCCCGAATACGAGATGCCATCGGTAACATGGGGCGTGATCCAAGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCGTCTTCGATTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCTTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAAAAATTAGGTCTAACCGTCGACGATATCAACAATTACCCTTTGATCTTAGGTTGCAGTGTCAGGAAGAACATGATCCCCGTGTTGGGGTACTTGGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGAATTCGTTAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATCGTTGAGCTTGCTCCTGTTATTAAGTTCCTCAGGGGGCTTGATGTGGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAACTTCTTGGGTTCAAGCTTGAAGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATCGGTCCAATGGTTACTCAGTATCCTTATTTATTAGGGATGAGGGTTGGGACCGTGATAAAGCCCATGATTGATTACTTGGTCGATTTAGGGCTGCCGAAGAAGGTTCTGGCTAGGATGTTCGAGAAGAGGGCTTATATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCAAATGTGGAATGTTTGATTAGTTTTGGTGTTAGGAGGGAGTGTTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTGAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGTGTGGTGGAGAACATGCCACAGGTAGTTAGCCTCAACCAGCATGTGATTATGAAGCCCGTTGAGTTCCTCCTTGGAAGGACTGTAACAGCGGAGGATGTGGCTAGAATGGTGACCAAGTGTCCTCAGTTGGTGGCATTGAGAGTTGAGCTGATGAAAAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCATTGAAAGAGCTTGTAGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCTAGAATCAAACCCAGATACCAGAGGCTCAAGAGTAAAGGGATAAGGTGTTCGCTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAAGGTCATTACATTGAAACTGAAAGTGTAGGTCCCAGATTCTGTATGGGAGGGAAATTGGAGCTACCGGCGAATGACATAATGTCAGATGAGGAAGCTGAGAGTGATGATGAAGTATTATACAGACGAACTGTTTCTCTATAG 1485 0.4572 MVTRRKLLNLLAILNVSDLLPHHVNAFKPFSKTPKTLRVYYGTQSSKLPEYEMPSVTWGVIQGRKEKLVSRVIVFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLILGCSVRKNMIPVLGYLEKIGIARPKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVDLGLPKKVLARMFEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLNQHVIMKPVEFLLGRTVTAEDVARMVTKCPQLVALRVELMKNSYYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPANDIMSDEEAESDDEVLYRRTVSL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03880 494 PANTHER CGI-12 PROTEIN-RELATED 136 451 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 331 361 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Lapu3g03880 494 FunFam Transcription termination factor mterf4, chloroplastic 100 237 - -
Lapu3g03880 494 FunFam Transcription termination factor MTERF4, chloroplastic 238 452 - -
Lapu3g03880 494 Gene3D Transcription termination factor 3, mitochondrial 241 454 IPR038538 -
Lapu3g03880 494 Gene3D Transcription termination factor 3, mitochondrial 100 240 IPR038538 -
Lapu3g03880 494 Pfam mTERF 136 444 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03880 Lapu-Chr3 62321788 62323465 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g03880 mTERF 1.1e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03880 K15032 - gmx:100809590 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03880 3 62321788 62323465 Lapu4g00227 4 2291821 2294206 PCT