Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03849 ATGGACAAGCTCTTTTTCAACTGTTTCATTGGATACTGTCTTCTTTATTCCCTCTTGCTTGTGCATGCCAAACAATTGTCATGCAATGAAACCCCTTATCCCCGTGTCTGCAAACATTACCTTGACACTACCAACACACTATCAGCCCTAGATGCTTCATCCTCTTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCTACTCAGGTTTACAAACTTGTCTCTAACATGGACTTGAATAATTTCAAGGACAAGCGATCCAAGTCGGCTTGGGATGATTGTTTGGAGCTCTATGAGGACACACTTTATCAGCTCAAACGCTCAGTGAACTCAAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCTAATCATCAAACATGCCAAAATGGTTTCACTGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCCTCCATGTTAAGCAACTTCTCCAAACTGCTTAGCAATTCCTTGTCCCTTAGCAAGGCTATGACTTTGACATCATTGTCATTAAAACAAAATGGTGGGCGAAGGTTGCTCTCAGATGGCTTCCCGTCTTGGATGTCACATTCAGACCGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGGAACTATAAGACCATCTCAGAGGGTGTGGCAGCAGCTGCTAAGCTAAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAGCATTGATATCAAGAGGACTGTGAAGAACTTGATGATCGTTGGAGATGGGATGGGTGCTACTATTGTTACTGGTAGTAATAACGCACAAGATGGTTCCACTACTTTCCGTTCTGCTACTTTTGCGGTTTCTGGCGATGACTTCATTGCTCGGGACATTACCTTCGAGAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCTGACCACTCGGTGTTCTACCGGTGCAGCTTTAAGGGGTACCAAGACACCTTGTACGTCTACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGTACCGTAGACTTCATTTTCGGGGACGCTGTGTCGGTTCTTCAAAACTGCAACATCTACGTGAGGAAACCGATGAGCTACCAGCAGAACACGGTGACAGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATTATCCATAACTGTCTTATCACTGCAGCTGGGGACCTGAAAGCGGTGCAGGGCTCTTTCAGAACCTATCTAGGTCGCCCCTGGCAAAAGTACTCTAGGACTGTGGTCATGAAGAGTGGCCTTGATGGCTTGATTAACGCTGCAGGTTGGTCTCAGTGGAGTGGAAACTTTGCTCTGAGCACTCTGTATTACGGTGAATATGCGAACACAGGAGCAGGTGCCAGCACCGGAGGAAGGGTGAAATGGGGAGGGTTTCGTGTGATCTCCAGCACTGAGGCTGTGAAGTTCACCGTGGGAAATTTCTTGGCCGGGGGCTCGTGGATTCCTGGGAGTGGCGTGCCCTTTGATGCAGGCTTATGA 1566 0.4834 MDKLFFNCFIGYCLLYSLLLVHAKQLSCNETPYPRVCKHYLDTTNTLSALDASSSSFHDMALKVTMDQATQVYKLVSNMDLNNFKDKRSKSAWDDCLELYEDTLYQLKRSVNSNNLNDRLTWQSASIANHQTCQNGFTEFNLPSHLNYFPSMLSNFSKLLSNSLSLSKAMTLTSLSLKQNGGRRLLSDGFPSWMSHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKESIDIKRTVKNLMIVGDGMGATIVTGSNNAQDGSTTFRSATFAVSGDDFIARDITFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTVDFIFGDAVSVLQNCNIYVRKPMSYQQNTVTAQGRTDPNENTGIIIHNCLITAAGDLKAVQGSFRTYLGRPWQKYSRTVVMKSGLDGLINAAGWSQWSGNFALSTLYYGEYANTGAGASTGGRVKWGGFRVISSTEAVKFTVGNFLAGGSWIPGSGVPFDAGL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03849 521 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Lapu3g03849 521 CDD PMEI-like_3 26 143 - -
Lapu3g03849 521 Gene3D - 204 521 IPR012334 -
Lapu3g03849 521 SMART PMEI_2 16 166 IPR006501 GO:0004857
Lapu3g03849 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Lapu3g03849 521 PANTHER PECTINESTERASE 18 511 - -
Lapu3g03849 521 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Lapu3g03849 521 Pfam Pectinesterase 210 506 IPR000070 GO:0030599|GO:0042545
Lapu3g03849 521 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Lapu3g03849 521 SMART complete 244 424 IPR006633 -
Lapu3g03849 521 SUPERFAMILY Pectin lyase-like 205 520 IPR011050 -
Lapu3g03849 521 FunFam Pectinesterase 204 521 - -
Lapu3g03849 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
Lapu3g03849 521 FunFam Pectinesterase 25 170 - -
Lapu3g03849 521 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03849 Lapu-Chr3 62079793 62083301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03849 4 521 Carbohydrate Esterase AT1G23200 52.536 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03849 - - gmx:100775898 937.947