Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03848 ATGGACTTGAATAAGTTCAAGGACAAGCGAGCCAAGTCCGCTTGGGAAGATTGTTTGGAGCTCTATGAAGACACACTTTATCAGCTCAAACGCTCAATGAACTCCGACAATGTAAACGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCATCAAACATGCCAAAATGGTTTCACCGATTTCAACCTTCCCTCTCACCTAAACTACTTCCCCTCCATGTTAAGCAACTTCTCCAAACTGCTTAGCAACTCCTTGGCCCTTAGCAAGGCAATGACTTTGACATCATTGCCATCGACAAAACAAAATGGCGGGCGAAGGTTGCTCTCGGATGGCTTCCCCTATTGGATGTCACATTCAGACCGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGGAACTATAAGACCATCTCAGAGGGTGTGGCAGCAGCTGCTAAGCTAAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAGCATTGATATCAAGAGGACTGTGAAGAACTTGATGATCGTTGGAGATGGGATGGGTGCTACTATTGTTACTGGTAGTAATAACGCACAAGATGGTTCCACTACTTTCCGTTCTGCTACTTTTGCGGTTTCTGGTGATGGCTTTATCGCTCGGGACATGACCTTCGAGAACACCGCCGGACCAGAAAAGTACCAAGCGGTGGCTCTCCGTTCCGGCTCCGACCGCTCGGTTTTCTATCGGTGCAGCTTTAAAGGGTACCAAGACACCTTATACGTCCACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGAACCATAGACTTCATTTTCGGAGACGCCGTTTCTGTGCTTCAAAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACGGTGACGGCACAAGGAAGAACCGACCCTAACGAAAGCACAGGCATCATCATCCATAACTGTCTTATCACTGCAGCTGGAGACTTGAAACCCGTACAGGGCTCCTTCAGAACCTACCTAGGTCGCCCCTGGCAGAAGTACTCAAGGACTGTGGTCATGAAAAGTTCTCTTGATAGCTTGATTAACCCTGCAGAATATTCTGTTTTTTTTATTCTAATTTAA 1149 0.4743 MDLNKFKDKRAKSAWEDCLELYEDTLYQLKRSMNSDNVNDRLTWQSASIANHQTCQNGFTDFNLPSHLNYFPSMLSNFSKLLSNSLALSKAMTLTSLPSTKQNGGRRLLSDGFPYWMSHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKESIDIKRTVKNLMIVGDGMGATIVTGSNNAQDGSTTFRSATFAVSGDGFIARDMTFENTAGPEKYQAVALRSGSDRSVFYRCSFKGYQDTLYVHANRQFYRDCDIYGTIDFIFGDAVSVLQNCNIYVRKPMSNQQNTVTAQGRTDPNESTGIIIHNCLITAAGDLKPVQGSFRTYLGRPWQKYSRTVVMKSSLDSLINPAEYSVFFILI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03848 382 CDD PMEI-like_3 4 93 - -
Lapu3g03848 382 NCBIfam pectinesterase inhibitor domain 5 92 IPR006501 GO:0004857
Lapu3g03848 382 SUPERFAMILY Pectin lyase-like 128 375 IPR011050 -
Lapu3g03848 382 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Lapu3g03848 382 Pfam Plant invertase/pectin methylesterase inhibitor 8 88 IPR006501 GO:0004857
Lapu3g03848 382 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 92 IPR035513 -
Lapu3g03848 382 PANTHER PECTINESTERASE 8 376 - -
Lapu3g03848 382 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 93 IPR035513 -
Lapu3g03848 382 ProSitePatterns Pectinesterase signature 1. 159 178 IPR018040 -
Lapu3g03848 382 FunFam Pectinesterase 4 130 378 - -
Lapu3g03848 382 Pfam Pectinesterase 133 375 IPR000070 GO:0030599|GO:0042545
Lapu3g03848 382 Gene3D - 127 378 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03848 Lapu-Chr3 62059997 62062839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03848 5 372 Carbohydrate Esterase AT2G45220 55.256 5.08e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03848 - - vum:124848015 684.871