Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03842 ATGGCCACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCTCGAATTCCGTCAACAAGGTGGACTCCGCCTCGGCTCTCAATGACGGTGTGAAGTGCTCGAAACCGGAGTCGCCGATTTTGATTTTCTTGTTCTTTCACAAAGCAATTCGGAATGAGCTTGATGCGCTGCACCGATTGGCCGTGGCATTCGCTACCGGCAACCGCTCCGACATTCAGCCGCTCTCCGAGCGCTACCATTTCCTCAGCTCTATGTACAGGCACCACTCCAATGCTGAAGACGAGGTGATATTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAAACATATTCTCTCGAGCACAAGGGTGAAAACAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCCATCAATAATGATGAAAGTTTTCCTAGAGAGTTAGCATCCTGCACGGGAGCCTTGCAGACGTCGGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTGGAAGAACAGGCATCCTTAGTTTGGCAGTTCCTCTGCAGTATTCCTGTGAATATGATGGTTGATTTTCTACCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAGAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGGAGAGGCGCTAACACAGTTGAAACTTGTGTAGATCATTCTCAAGTTCTATGTAGTTCTAGGTCATTACCCCATCAGGTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACATGTGGAAAAAGGAAATATTCTGGATCTATGATAGATGTTTCTGATACCACTGGAGCACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTGAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCTGGAGATTTTACTAATATGTTTGCTTTTAATGAAAGATTTCAATTCATAGCCGATGTTTGCATCTTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCGGAAGAAGAAAGCCAGTTTAATGACTTCCGGAGTTTGATTGAAAGTATTCAAAATGAAGGAGCATCATCTAATTCAGATGTTGAATTTTACTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAGGAAGTTCAGGTTCTTCCTCTGGCAAGAAAGCACTTTAGCTTTAGAAGACAGTGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAATATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGATGGGGTTGCAAGGCTCGTAATGAAGGTCAGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTGCCCAAAGACTTTCTGATATTGAAGAAAATATTGGTCCATCATCCTGTGCTTGTGCATCTGCATTATCCAATAGACACTGCTCAGTATTAGCTGAATCAGGAGAGAACAAAAGAGCAGTCAAGCGAAACATATTGGAGTTGCACAAAAATGAAGACGTGCCAGAAACTTCAGCGACTGAAAGCATTCAGAAACAATGTTGTAGTACACGGTCTTGTTGTGTGCCAGGTTTGGGAGTAAATAGTACCAATTTAGGGCTGAGTTCTCTCTCTACTGCCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCAGCCCCATCCATTAATTCCAGTCTGTTCGTATGGGAAACAGAGAGAAGCTCATGCAATGTGGGATGTACACAAAGACCAATTGATACAATTTTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATCTTGATGTTGAATCCGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCGGCAATTTAATGGAAGATTTCGACTTTTGTGGGGCTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGCTAGACCATAAACAGGAAGAAAAATTGTTTGAAGATATTTCCCGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAATCCTTGCAGATAATCCACATGGCTGAGGGTTTAAGTGAAAGTAACTTTGGAACCTCTGATGGCGATACTAGTGACGTCATAAAAAAATATAATGAACTTGCTACCAAACTTCAGGGGATGTGCAAATCCATAAGAGTAACCCTAGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACAGGTGCGGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCACTTACTCAGGATGAGCAGAACAGAATGATGGATACATGGAAGCAGGCAACAAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTGTGGCACAGGCAGAAGCATCAGATCATAGCACTTCTCAGAGAGGTGCTGAACATCAAGAAAGCTTGGGCCACAATGATCCGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATAGAGACTCAACACTTGATCCAAGGAGAAAGGCATATCTTGTACAGAATCTATTGACCAGTCGGTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCTGTCAGAAGGATCATCTAACAGTGTAGAAATAGTAGGACTCTCACCATCATTTCGAGATCTGGAGAAACATATATTTGGGTGTGATCACTATAAGAGAAATTGCAAGCTTCGGGCTGAATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGTCTGAATATACAGCCAATAGGGCCTATTTGCATGACACCTTCATGTAATAGATTATCAATGGCGAAGTACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAACGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATCGATTATTTTCATTGCATGAAGTGCAATTGTTGCCTAGGGATTAAATCAGCATCTCATAAATGTCTCGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGCGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTGTCAGGACATACTCTGCCATGACTGTGATCGGAAGGGCTCTTCACGCTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAG 3708 0.4237 MATPLDGGGVAVLSNSVNKVDSASALNDGVKCSKPESPILIFLFFHKAIRNELDALHRLAVAFATGNRSDIQPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGENNLFDHLFELLNSSINNDESFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVDFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRGANTVETCVDHSQVLCSSRSLPHQVEKVNCACESTTCGKRKYSGSMIDVSDTTGAHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNMFAFNERFQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIESIQNEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEANMFQRNMQLAAPATDSALVTLFCGWGCKARNEGQCLSSGASGCCPAQRLSDIEENIGPSSCACASALSNRHCSVLAESGENKRAVKRNILELHKNEDVPETSATESIQKQCCSTRSCCVPGLGVNSTNLGLSSLSTAKSLRSLSFSSSAPSINSSLFVWETERSSCNVGCTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISRVLSEFSVLHESLQIIHMAEGLSESNFGTSDGDTSDVIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNRMMDTWKQATKNTMFNEWLSECWKESPVSVAQAEASDHSTSQRGAEHQESLGHNDPMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIVGLSPSFRDLEKHIFGCDHYKRNCKLRAECCGKLFTCRFCHDNVSDHSMDRKATLEMMCMRCLNIQPIGPICMTPSCNRLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCHDCDRKGSSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03842 1235 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Lapu3g03842 1235 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Lapu3g03842 1235 CDD Hr-like 297 426 - -
Lapu3g03842 1235 CDD Hr-like 645 805 - -
Lapu3g03842 1235 FunFam Zinc finger protein-related isoform 1 1114 1163 - -
Lapu3g03842 1235 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Lapu3g03842 1235 Gene3D nmb1532 protein domain like 297 444 - -
Lapu3g03842 1235 Gene3D nmb1532 protein domain like 36 187 - -
Lapu3g03842 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1232 - -
Lapu3g03842 1235 MobiDBLite consensus disorder prediction 880 903 - -
Lapu3g03842 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1163 IPR013083 -
Lapu3g03842 1235 Pfam Hemerythrin HHE cation binding domain 643 806 IPR012312 -
Lapu3g03842 1235 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Lapu3g03842 1235 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Lapu3g03842 1235 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Lapu3g03842 1235 CDD Hr-like 41 167 - -
Lapu3g03842 1235 Gene3D - 1190 1231 - -
Lapu3g03842 1235 Pfam Ring finger domain 1118 1160 IPR001841 -
Lapu3g03842 1235 CDD RING-H2_Pirh2-like 1118 1161 - -
Lapu3g03842 1235 SMART ring_2 1119 1160 IPR001841 -
Lapu3g03842 1235 Gene3D nmb1532 protein domain like 640 879 - -
Lapu3g03842 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Lapu3g03842 1235 SUPERFAMILY RING/U-box 1117 1164 - -
Lapu3g03842 1235 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Lapu3g03842 1235 SUPERFAMILY CHY zinc finger-like 983 1046 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03842 Lapu-Chr3 61983634 61994426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03842 1 1235 C2H2 Transcription Factor Family AT3G18290 65.766 0.0 1683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03842 K16276 - gmx:100801725 2319.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03842 3 61983634 61994426 Lapu3g03842 3 61983634 61994426 ECH
Lapu3g03842 3 61983634 61994426 Lapu4g00202 4 1988057 1998602 PCT