Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03838 ATGGATGTGGCATCGTCCTCCATCTCTCCACAGACCTCATCGCCACTCATTTCTTCCCCAAACTCCACCTCCATCCATCGCCCCGCCGTTATTCTGCCTGGCTTAGGGAACAATTCCGGTGACTACCAGAGCTTGAAGCAAACACTGAATGACAAGTACGGCGTGTCCGCCGTGGTGGCGAAGGTTTCCAGGCTGGATTGGCTCCGCAACGCCGCTGGTCTGGTGGACCCCAACTACTGGCGTGGCACTCTTCAACCCAGGCCTGTTCTGGATTGGTATTTGGAGAGGGTTGAGGAGGCTGTTGAAGAAGCGAAGGAAAGTGGAAGCGGATGCGAAACTGTATCGTTGATCGGACACTCTGCAGGAGGATGGCTTGCACGTGTGTACATGCAAGAATTTGGATGTTCCCATGTATCCCTCTTGTTGACTCTTGGCACCCCTCATCTTCCACCTCCAAAAGGAGTGCAAGGGGTTATTGATCAAACAAGGGGTCTCCTTGACTATGTTCAACACAATTGCTCCAAGCCTGTTTACACCCCTCAACTCAAGTATGTATGTGTAGCAGGAAGGTTTATCAAAGGCTCTCCGCTTTTTGGCAATTCAGCTTCTGAGCCTGCACTTTCATCTCACACTTCTCTTCTCAACACCACTGCCACCACCTCTCCACCTAATGCAACATTACGTTCTCGCTTTGTTGGCCAGGGTTACAAGCAGGTTTGTGGGCAAGCAGATGTATGGGGTGATGGTGTTGTGCCCCAACTATCAGCTCATCTTGAGGGTGCACTTAACGTTTGCTTTGATGGAGTTTATCACTCACCTGTTGGTGCAGATGATATGTATACATCTAGGAAGAAAATCCACAAGGATAAGGATGCCGAGCCAACTGAGTTTGAAGAGTCAGTTGGGCAGGCACTGTTTGATTTGGAGAACACCAACCAAGAGCTTAAAAGTGATCTGAAGGATCTATACATTAATTCCGCCATCCAAATTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATTCATGTTCCATACAGATTAAGGAAAGGTTTTCGCAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGGAAGGATGTTATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAGGGTTCTGCTGTTCAGCGTCCACGCAGTCGCACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTACCTGCTGAGATTGTTGGGAAGCGTGTGAGATATAAAATTGATGGATCTAAGATTATGAAGGTCTTCCTAGATCCTAAAGAGAGAAACAATACAGAATACAAGTTGGAAACATTTGCTGCAGTGTACCGGAAGCTTTCGGGCAAAGATGTTGTGTTTGAGTATCCTATGACAGAGGCTTAA 1410 0.4766 MDVASSSISPQTSSPLISSPNSTSIHRPAVILPGLGNNSGDYQSLKQTLNDKYGVSAVVAKVSRLDWLRNAAGLVDPNYWRGTLQPRPVLDWYLERVEEAVEEAKESGSGCETVSLIGHSAGGWLARVYMQEFGCSHVSLLLTLGTPHLPPPKGVQGVIDQTRGLLDYVQHNCSKPVYTPQLKYVCVAGRFIKGSPLFGNSASEPALSSHTSLLNTTATTSPPNATLRSRFVGQGYKQVCGQADVWGDGVVPQLSAHLEGALNVCFDGVYHSPVGADDMYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAIQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPMTEA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03838 469 ProSitePatterns Ribosomal protein S7e signature. 357 370 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lapu3g03838 469 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 14 279 - -
Lapu3g03838 469 Gene3D alpha/beta hydrolase 25 283 IPR029058 -
Lapu3g03838 469 SUPERFAMILY alpha/beta-Hydrolases 27 257 IPR029058 -
Lapu3g03838 469 Pfam Ribosomal protein S7e 285 464 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lapu3g03838 469 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g03838 469 Coils Coil 305 325 - -
Lapu3g03838 469 Pfam PGAP1-like protein 105 157 IPR012908 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03838 Lapu-Chr3 61938943 61947634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03838 279 469 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.105 6.06e-111 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03838 - - vun:114177445 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03838 3 61938943 61947634 Lapu3g03838 3 61938943 61947634 ECH