Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03836 ATGGCTGAATTCACTGCAGATTTGCAAAGCTTTAGACCCTCCTTTCCTTTCCTAGATGTCGATAACATGGAAATTCAAAACTTGGTTCCATTTGACAGGTTATTGGGCTCCCCAGAACCTGAATTTCCAGGAAACTTGGAAGAAAATTTTCCGGGTCTTTTTCAATGTGTGGATCGCAATGCAGTTCCAGTGTTAGTTCCTAGTAGTTCAAATGATGTCCATGAAGGTAAAAAGAGGGAAGCAACTGATATGTGCGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAAGGCAAAAAATAGTTCTGGAAGAGGCAAGAGAGCAAAAAGGAATGCAGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTTAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGTAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGCTTAGTGCAGCAAGTACCTATTATGACTTCAACTCAGAGTCAGATGCTTTAGAAACAATGCAGGTGCCTACTGCTAAATATTTCTTGATCAGCTTCATGTGCTTGTTTTAG 612 0.4069 MAEFTADLQSFRPSFPFLDVDNMEIQNLVPFDRLLGSPEPEFPGNLEENFPGLFQCVDRNAVPVLVPSSSNDVHEGKKREATDMCDPSSGNSTPDISESGSKAKNSSGRGKRAKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKLSAASTYYDFNSESDALETMQVPTAKYFLISFMCLF* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03836 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Lapu3g03836 203 MobiDBLite consensus disorder prediction 85 106 - -
Lapu3g03836 203 Gene3D - 127 187 IPR036638 GO:0046983
Lapu3g03836 203 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 169 IPR024097 GO:0006355
Lapu3g03836 203 MobiDBLite consensus disorder prediction 67 125 - -
Lapu3g03836 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03836 Lapu-Chr3 61917878 61919073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03836 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 39.271 3.99e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g03836 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03836 - - vun:114179606 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03836 3 61917878 61919073 Lapu3g03836 3 61917878 61919073 ECH