Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03834 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTACTAAGGAAAGTGTCTGACACTAGCTTCACATCCAAGGTTGCAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACAGGGCTTCGAACGAACCGAGCCACAGAATCAGGGTATTGGAAAACCACAGGAAAAGATAAGGAAATATTTGGAGGTGGTGTTCTGATAGGGATGAAGAAAACTTTGGTGTTTTACATGGGTAGAGCTCCCAGGGGTGAGAAAAGTAACTGGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAGCTCAGCACCAAAGAAACCACAGCAGACATCATCCTCCCAACCATCTCAAGAATCTCCGACCTCAATGGTCAATGAATTTGGTGATGTTGACCTACCAAATCTTAATACCATTGCAAATTCATCTAGCAGCTTCACCAACATTGCAGCACAAACTTACAACAGTGGTGATCCCAGCAATGTTAGCACAAACATGAACTTGACCATGAATTGGCCTTCTGCAACTGAGGTTCCATCTCTCCCATGGCCTTCTGGATTATTGCTGAATCCAAACCTTTCTGTCAACTCATTGCTTCTCAGGGCATTGCAGCTTAGGAGTACTTATCAACAAAGAGAAGCTGCAACTAGTGATCACTTTGCAACATATGGTCCTCAAACATTTTCTCTCAATAATATTGGAGCTGATAATCTCACTCCAAATCTCAGTGCCTCAGCTTCTTCTAGAGCTTTAGAATCTTGTGTGCTGCAGGAGCAACCGTTCAATATGGACTCCATTTGGTGA 903 0.4341 MEENLPPGFRFHPTDEELITYYLLRKVSDTSFTSKVAAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWEEWVICRVFQKSSAPKKPQQTSSSQPSQESPTSMVNEFGDVDLPNLNTIANSSSSFTNIAAQTYNSGDPSNVSTNMNLTMNWPSATEVPSLPWPSGLLLNPNLSVNSLLLRALQLRSTYQQREAATSDHFATYGPQTFSLNNIGADNLTPNLSASASSRALESCVLQEQPFNMDSIW* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03834 300 MobiDBLite consensus disorder prediction 137 160 - -
Lapu3g03834 300 Pfam No apical meristem (NAM) protein 6 123 IPR003441 GO:0003677|GO:0006355
Lapu3g03834 300 ProSiteProfiles NAC domain profile. 5 152 IPR003441 GO:0003677|GO:0006355
Lapu3g03834 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 193 - -
Lapu3g03834 300 Gene3D NAC domain 14 138 IPR036093 GO:0003677|GO:0006355
Lapu3g03834 300 SUPERFAMILY NAC domain 3 134 IPR036093 GO:0003677|GO:0006355
Lapu3g03834 300 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03834 Lapu-Chr3 61879780 61882546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03834 1 300 NAC Transcription Factor Family AT3G18400 51.506 2.80e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g03834 NAM 8.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03834 - - gmx:100775645 446.817