Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03830 ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATGATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCCAACCAGTTAGCAAGCAGACACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGTAACCACCACCACGCACGCATGGCACAGCGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAGCAAGCACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAATAACAGCAGTGTTCTTCCCCTGGTGCCGGAGCTGGGAGGGGAAGAACAAGAACCTGTGGTTGTGGATAATGATGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTTTAATGTGAGAACCGATGACTTGGACAGTTTTTCCGACGTGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACAATGAAATAAGTGCGTGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGAGGAAGAGGAAGTTGATGGTGATGTAGCGTGTTATCTGGAGTCGGTTTTTGACATGACGAATGATGATGCCTTTCGTTGGAATAGCATTGAGTCTGTGCTTTCAGATGCACGGGAAGAGAAGGAGTGTGTGGTGGCGAGTGGTGTTGTTGGTGAAGAAGGAGGAGCAAAGAGAGACATATTTTTGAGACTTAACTACGATGAGGTTATAACTGCGTGGTCTAGTCAAGGTTCTTCTCCCTGGACAACTTCAAACCCCCCTAAGTTCAACTCTGATTATGACTTCTGCTTGGGTTTGAGTGGTGTAGATGGGGAGGTAAGAAGCTTAAGGGGTCACCTAGACGGGGGAAGAGAAGCAAGAGTGTCGAGATACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTAAGAAAGTTGAACGCCGAGAAAAGGCCCCGAATGAAAGGTCGTTTCGTGAAGAGAACATGCTTTGTTGGAGCCAATGCTTTTCCAGCTTACCAATGA 1104 0.4792 MRDMKDAGALGAKTARACDSCISRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTHAWHSGFTRKARTPRHNNSKHFALQQRLKEEVLFNNSSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDNFNVRTDDLDSFSDVDFAEFAADVENLLDKEDNEISACVGGGVQGAMAKVKEEEEVDGDVACYLESVFDMTNDDAFRWNSIESVLSDAREEKECVVASGVVGEEGGAKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFCLGLSGVDGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03830 367 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Lapu3g03830 367 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Lapu3g03830 367 CDD Bbox1_BBX-like 17 60 - -
Lapu3g03830 367 Pfam CCT motif 312 354 IPR010402 GO:0005515
Lapu3g03830 367 SMART bboxneu5 13 60 IPR000315 GO:0008270
Lapu3g03830 367 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 355 - -
Lapu3g03830 367 ProSiteProfiles CCT domain profile. 312 354 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03830 Lapu-Chr3 61844721 61846623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03830 7 354 C2C2-CO-like Transcription Factor Family AT1G25440 42.925 5.69e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu3g03830 zf-B_box 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03830 - - vun:114176987 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03830 3 61844721 61846623 Lapu4g00183 4 1837639 1841701 PCT