Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03819 ATGACGAATTTTATTTTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCCGAAAAAAATGGCCATTCAGATGGTGCTTCGAAAAGTTCAGAATTCCTTCAGCAGTTCCTAAAATGTGGTCCGAAGATTCTTCGAACGTGTTTTGATAAGGACAAAAAAAACATTTCAATAAAAAGCAGGATGACTGAAACTAAGTCAACTGGTAAGATGGTTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCATCAGCCCTCTAGAAAGCAGCCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTCGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAAAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACCTCAAAATTCAAGGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGGTGGCTCGCCACTGTTCCCAATGTAAATTCGGATTCTGCAGAGGGTTCTCTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTATCAACTTCCTCGGTTAAAATAATTTTAATTGAAATATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTCTGGTATTACAAGAGTCGGGATGAATCTCCCACCAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTGAAGCCTTGCACCGAATATACTTTTCGGATTATATCTTACACAGATACACGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAACCCCTCTTCGTCTGTTGCTATGAGTCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATAGGGCCAAATGACCCAATGGACGACTGTGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGTGCCAATGTGAAAAATTGCTGCGGACAGAGTGAAATGTTGGATAAACCAAGAATTCCAGAAGCACAGTTGCCCACAGTTTCTCGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAGGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAAACCTGGACCCATGGGCCAACAGGAGAAGTATCTGCTGTTGATTCACGCATAGATATGTGCAGAAAAAGGATAGCAAGCACAATGGAAGAAACACATGATTGTGACAGTACTTTAATAAACGGTTCTCCTTTACGCATATCTGATGGTTCATGTTCCTTGGACGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATGGATGATCCGAGTAGTTTGGCAGGACAACTGGTAGACTCCTTTTCTGATATTATATCCAACAAGAGGCTAAAAAATGGATTCAGTAGTAAAGCTGGGGCATCAAATTAA 2145 0.4219 MTNFIFSGVQSLSSSVQSTPEKNGHSDGASKSSEFLQQFLKCGPKILRTCFDKDKKNISIKSRMTETKSTGKMVKKQDTKKVSSFSHQPSRKQPRKGENPTRLIPPPDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDIQKLCSLAIEKADRWLATVPNVNSDSAEGSLPAACKFVFEEVSTSSVKIILIEISNICSEEIKGYKLWYYKSRDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNNPSSSVAMSHEKENLLSRGNSSGSKIGPNDPMDDCGFKVRDLGKILRLAWAQEQGYLEEFCCANVKNCCGQSEMLDKPRIPEAQLPTVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRIASTMEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRLKNGFSSKAGASN* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03819 714 MobiDBLite consensus disorder prediction 62 112 - -
Lapu3g03819 714 MobiDBLite consensus disorder prediction 562 582 - -
Lapu3g03819 714 PANTHER VIN3-LIKE PROTEIN 2-RELATED 12 709 IPR044514 GO:0010048|GO:0040029
Lapu3g03819 714 Pfam PHD - plant homeodomain finger protein 121 239 IPR032881 -
Lapu3g03819 714 Gene3D Immunoglobulins 308 410 IPR013783 -
Lapu3g03819 714 ProSiteProfiles Fibronectin type-III domain profile. 320 419 IPR003961 GO:0005515
Lapu3g03819 714 Pfam Fibronectin type III domain 326 402 IPR003961 GO:0005515
Lapu3g03819 714 MobiDBLite consensus disorder prediction 1 30 - -
Lapu3g03819 714 CDD FN3 350 401 IPR003961 GO:0005515
Lapu3g03819 714 MobiDBLite consensus disorder prediction 62 82 - -
Lapu3g03819 714 SUPERFAMILY Fibronectin type III 326 402 IPR036116 GO:0005515
Lapu3g03819 714 MobiDBLite consensus disorder prediction 567 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03819 Lapu-Chr3 61672623 61682283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03819 117 705 PHD Gene Family AT3G24440 48.350 1.40e-176 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03819 - - gmx:100816128 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03819 3 61672623 61682283 Lapu3g03819 3 61672623 61682283 ECH
Lapu3g03819 3 61672623 61682283 Lapu4g00156 4 1550943 1560381 PCT