Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03817 ATGACTACTCGACTGAAGGAAGATGAAAAAAATGAACGACTAATTCGAGGTCTTCTTAAACTCACACCGAACCGAAGGTGTATTAACTGTAATAGTCTGGGACCGCAATACGTGTGCACTAATTTCTGGACGTTTGTATGCACTAATTGTAGTGGAATACACCGAGAATTTACACATCGCGTAAAATCAATTTCAATGGCCAAGTTTACTGCACAAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGCGCAAAAGATATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCCATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAGAGGACCAATGATAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACAGAGACGTATCAGGGAGGACCTAAAAGCCCTCCATATGAGGACCGTTACAGTGATAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGATAAGTCCGGGTCGTCCTCCTGTAATCAATGACTGGCGTCGAGAAGAAAGATTTGGGGATGGACGAAAATATGAGGATCACAGAATATCCGATGGAAATCATAAGGGGCAAAGCCATTCTCCTGATCATACCAAGGATCCAGATTCTTCCAGCCCCCCTGTGGTCCGACCTGTTAGAGAAATATTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGACAGGCTGCTAATGTCTCAACACTCACACAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCCATGGAACCCAGACAGAAGTTAAGCCTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATTCTGAACCATCTGTTTCTCCAGCAATTTCTCAAGCCCCACAGACTACTGTTGCTGAACATGGAATACCTGCAAATTCCAATGATAATAATTGGGCCTCTTTCGATTTTTCTCATGAGGCAAAAGCACCTCAGGGTCCTTCAAACGTAAATCCACTTGAATCTGTGCTGACACAATTGACAGTGCCAGTATCTTTACCTTCTCAGGTTTCTCGACCCCAAGGACCTCTGACTGGATCAACTCTTACTGCTACTGCTGCAGGAGGTACAATTGCTAGCAGCTTCTCAACATTCCCGCCCAGTGGTGCTTCAGCAACATCTTTTGAATTGACAGCGGCACCAGCTCTCAATGCCGGACAGTGGCCTAATTCGCAGTATCAGCAACAACAACCTTTGTTCCCTGCTGCTGCTAGTCAGCCTTCTGTTCAACAAGCTACACCACCAGTTGGTGCAGCTTTCAATAGTCAGCCCTGGACTGTACCTTCTGTACCTTCGGTACAGGGGCATCCAGGCACATCAATGCCCCATGCATCACACCTTGTCCCAATGCCAGCCAATGAGGCTAAATCTAATGTTGTTTTACAACCTTCTACAGTGGACATGAAACCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACAGTAAAATATCCATCCTTCCCTGCTCCAGTCCCAGGTTGGCACATGGGTCTACCACATAGCATGAGTGTCTCAATTCCATACAATAATGCAGTGCCCATGCCAAGTTTTCCACAAGCATCGAAGTCAATAAATCCATTTGACGTCATTAATGAACCTACTCCAGTTCAAGTCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTCTGCCTAGCGTAACACCTGCAGCTACAATGCACCCTTCAAACATGGTTAATCCATCTATTGCCTGGAACCAGTCCTCATCGTCATTGACATATGTATCAGTGCCGCCTGCTCAAGCAAAAACTATTGCACCTGCTCAAGCACATGTTGCACCCGTAATGGGACCAGGGACATACATGGGACAACAAATGGCCACTAACATGCCCATGCCAAGTAGGCATCAAGGATTTGGGAGGTTTGCGGCTGAGGGAACTGCTTTTGGCTTCTCAAATCCAGATCAGCAGCTGACTGGTAGTAGGTTGTCGACTGCTGTTACCCCAAACACCTTCCAGGCAGGAGGAAACCCTTTCGGATGA 2130 0.4559 MTTRLKEDEKNERLIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKDIYFKEWDPQRHSLPDSSHVDRLRDFIKHVYVDRRFSGERTNDKPPRVKGDKDDFYENKRTETYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGDYKISPGRPPVINDWRREERFGDGRKYEDHRISDGNHKGQSHSPDHTKDPDSSSPPVVRPVREILGENVVPLRISEPPKTNSGQAANVSTLTQRTASSSSLASSHGTQTEVKPETIKSLIDFDDDSEPSVSPAISQAPQTTVAEHGIPANSNDNNWASFDFSHEAKAPQGPSNVNPLESVLTQLTVPVSLPSQVSRPQGPLTGSTLTATAAGGTIASSFSTFPPSGASATSFELTAAPALNAGQWPNSQYQQQQPLFPAAASQPSVQQATPPVGAAFNSQPWTVPSVPSVQGHPGTSMPHASHLVPMPANEAKSNVVLQPSTVDMKPSGRSELPEDLFTVKYPSFPAPVPGWHMGLPHSMSVSIPYNNAVPMPSFPQASKSINPFDVINEPTPVQVPTFPSMSSLQGALPSVTPAATMHPSNMVNPSIAWNQSSSSLTYVSVPPAQAKTIAPAQAHVAPVMGPGTYMGQQMATNMPMPSRHQGFGRFAAEGTAFGFSNPDQQLTGSRLSTAVTPNTFQAGGNPFG* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03817 709 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lapu3g03817 709 MobiDBLite consensus disorder prediction 123 342 - -
Lapu3g03817 709 MobiDBLite consensus disorder prediction 259 298 - -
Lapu3g03817 709 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lapu3g03817 709 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lapu3g03817 709 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lapu3g03817 709 PANTHER ARFGAP/RECO-RELATED 1 709 IPR044820 GO:0005096
Lapu3g03817 709 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Lapu3g03817 709 MobiDBLite consensus disorder prediction 196 233 - -
Lapu3g03817 709 MobiDBLite consensus disorder prediction 313 342 - -
Lapu3g03817 709 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Lapu3g03817 709 MobiDBLite consensus disorder prediction 123 146 - -
Lapu3g03817 709 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Lapu3g03817 709 Pfam Putative GTPase activating protein for Arf 14 123 IPR001164 GO:0005096
Lapu3g03817 709 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Lapu3g03817 709 CDD ArfGap_AGFG 12 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03817 Lapu-Chr3 61631963 61638862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03817 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 3.82e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03817 - - pvu:PHAVU_002G314500g 1136.32