Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03816 ATGACTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAGCTCACACCGAACCGAAGATGCATTAATTGTAACAGTCTGGGACCACAATATGTGTGCACGAATTTCTGGACGTTTGTATGCACTAACTGTAGTGGAATACACCGAGAATTTACACATCGGGTAAAATCAATTTCAATGGCTAAATTTACTGCACTAGAAGTTAGTGCCCTTCAGGAAGGTGGAAATCAGCGTGCAAAAGACATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCCATGTTGACAAGCTCCGGGATTTCATTAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAAAGGAGCAATGATAAACCTCCAAGAGCAAAGGGTGACAAAGACGATTTCAATGAAAACAATAGGACTGAGACGTATCAAGGAGGACCCAAAAGCCCTCCTTATGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGATAAGTCCTAGTCGTCCTCCTGTAATCAATGATTGGCGTCGAGAAGAAAGGTTCGGGGATGGACGGAAATATGAAGATCATAAAATATCTGATGGAAATCGTAAGTGGGAGGGTCATTCTCCTGATCGAATTAAGGATCCAGATTCTTCCAGCCCACCAGTTGTTCGACCTGTTAGAGAGATATTGGGAGAAAATGTAGTGCCTCTTCGCATAAGTGAACCGCCCAAAACAAACAGTGGACTGGCGGCTATTGGCTCAACACTCACGCAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCCATGGAACCCCAGTAGAAGTTAAGCCTGAGACTCTTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCCGTTGCTCCAGCAGTTCCTCAAGCCCATCAGACTCCTGTGGCTGAACTTGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATTTTGCTCCTCAGGCAAAAATTCCACATGGTCCTTCAAACGGCAATCCACTTGAATCTGTGCTGACTCAATTGACAGTACCGGTATCTTTACCTTCTCAGGTTTCCCAAGCCCAAGGACCTGTGACGGGATCAACTCTTGCTGCTACTGCTACTGCTGCTGGAGCTACAATTGCTAGCAGCTTCTCAACATTCCCTGCCAGTGGTGCTTCAGTAACATCTTTTGGATTGATGACAGCACCGATTCTGAATAATGCAGGACAGTGGGCTAGTTTGCAGTATCAGGAACAGCAACCTTTGTTCACTGCTGCTGCTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCTTCTGTACCATTGGTACGAGGGCATCCAAGCACATCAATGCCCCATGCATCACACCTTGTCCCAAAGTCTGCCAATGAGGCTAAATCCAGTGTTGGGTTACAACCCTCTACAGTAGACAGTGGAAGAAGTGAACTTCCAGAGGATCTATTCACAGTTAACTATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCACCTAGAATGGGTATCTCAATTCCATACAATAATGCGGTGCACATTCCAAGTTTTCCGCAAGCATCAAAATCAATAAATCCATTTGATGTCAAGAACGAACCTATTCCAGTTCAAGCCACAACATTTCCTTCCATGTCATCACTGCAAGGTGCTCTGTCGACACCTTCAGCTACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCTGTCCTCATCATCATATGTATCAGTGCCGCCTCCTCAAGCACAAACTCTTTCACCCGCAATGGGACCAGGGGCATACATGGGACAACAAATTGGCACTAACATGCCAATGCCAAGGCATCAAGGATTTGGGAGTTTTACTACTGAGAGAACTGCTTTTGGCTTCTCAAATCCAGATCAACAGCTGACTGGTAGTAGGTTGTCGAGTGCTGTTGCTCCAAGCACCTTCCAGGCAGGAGGAAACCCTTTCGGATGA 2094 0.4522 MTSRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKDIYFKEWDPQRHSLPDSSHVDKLRDFIKHVYVDRRFSGERSNDKPPRAKGDKDDFNENNRTETYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGDYKISPSRPPVINDWRREERFGDGRKYEDHKISDGNRKWEGHSPDRIKDPDSSSPPVVRPVREILGENVVPLRISEPPKTNSGLAAIGSTLTQRTASSSSLASSHGTPVEVKPETLKSLIDFDDDPEPSVAPAVPQAHQTPVAELGMPANSNDNNWASFDFAPQAKIPHGPSNGNPLESVLTQLTVPVSLPSQVSQAQGPVTGSTLAATATAAGATIASSFSTFPASGASVTSFGLMTAPILNNAGQWASLQYQEQQPLFTAAASQPSIQQATPPVGGALNNQPWTVPSVPLVRGHPSTSMPHASHLVPKSANEAKSSVGLQPSTVDSGRSELPEDLFTVNYSSFPAPVPGWQMGLPPRMGISIPYNNAVHIPSFPQASKSINPFDVKNEPIPVQATTFPSMSSLQGALSTPSATMHSSNMGNPSLAWNLSSSSYVSVPPPQAQTLSPAMGPGAYMGQQIGTNMPMPRHQGFGSFTTERTAFGFSNPDQQLTGSRLSSAVAPSTFQAGGNPFG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03816 697 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lapu3g03816 697 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lapu3g03816 697 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lapu3g03816 697 MobiDBLite consensus disorder prediction 123 145 - -
Lapu3g03816 697 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Lapu3g03816 697 MobiDBLite consensus disorder prediction 196 233 - -
Lapu3g03816 697 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Lapu3g03816 697 MobiDBLite consensus disorder prediction 669 697 - -
Lapu3g03816 697 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Lapu3g03816 697 PANTHER ARFGAP/RECO-RELATED 1 697 IPR044820 GO:0005096
Lapu3g03816 697 MobiDBLite consensus disorder prediction 669 689 - -
Lapu3g03816 697 MobiDBLite consensus disorder prediction 123 242 - -
Lapu3g03816 697 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lapu3g03816 697 CDD ArfGap_AGFG 12 122 - -
Lapu3g03816 697 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Lapu3g03816 697 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03816 Lapu-Chr3 61620734 61629371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03816 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 7.15e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03816 - - pvu:PHAVU_002G314500g 1128.24