Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03813 ATGAGTGGTCTTAACAATGGCGACGCTGGCTCCGTCAACAAGCTTCCCTCCATCAAGTTCACCAAGCTTTTCATCAATGGAGACTTCGTTGACTCTGTTTCAGGAAAAACATTCGAGACAATAGATCCGAGAACAGGAGATGTGATAACAAGAATCAGCGAAGGAGAAAAAGAAGACATAGACATTGCTGTTAAAGCAGCACGTCACGCCTTTGACTTTGGTCCTTGGCCTCGCATGTCTGGCTCTGATAGAGCTAAAATATTGATGAAATGGGCGGAACTAATTGATGAACACGCAGAAGAACTTGCAACACTAGATTCCATTGATGCGGGGAAGTTGTATCACATGTGTAAGAATGTGGAAGTTCCATCAGCAGCAAACACTCTACGTTACTATGCAGGTGCTGCTGATAAAATTCATGGAGAGGTGTTGAAAACGTCTGGAGAGTTTCATGCATATACATTATTGGAACCAGTTGGTGTTGTGGGACACATAACTCCTTGGAATTTTCCCAATACCATGTTTTATATTAAGGTTGCTCCTTCTTTAGCTGCTGGTTGCACCATGGTCATCAAGCCTGCTGAGCAAACACCCCTCTCTGCTTTGTATAATGCTCATCTTGCTAAATTGGCTGGCATTCCAGATGGAGTGCTTAATGTAGTTCCAGGATTTGGCCCTACTGCTGGTGCTGCATTAAGCTCACACATGGATGTTGATAAGGTCAGCTTTACTGGTTCAACCCAAACGGGTCGTGAGATAATGCAGGCTGCGGCTAAGAGTAACTTGAAACAAGTTTCACTAGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCCGATGTAGACAAAGCTGCTGAGCTTGCTTTAATTGGAATCCTATATAACAAGGGAGAAGTTTGTGTAGCAAGTTCTCGTGTGTTTGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAATTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCTTTTGATCCTAAAGTCCAACAAGGACCACAGGTTGACAAGGAACAATATGAGAAGATTCTTTCATATATTGAGCATGGAAAGAGAGAAGGAGCAACCCTTTTGACCGGAGGTAAAACAGTGGGCAACAAGGGCTACTTCATTGAGCCAACAATTTTCTCTGATATAAAGGATGATATGCTTATAGCACAAGATGAAATATTCGGCCCTGTGATGGCGTTGAAGAAGTTTAAGACCATTGATGAAGCAATTAAAAGTGCTAACAATACTAAGTATGGCTTAGCAGCAGGCATAGTGACCAAGAATTTGGATACAGCAAATACTGTGTCAAGGTCCATTCGCGCAGGTACCATTTGGATCAATTGCTACTTTGCCTTTGGTGATGATATTCCATTTGGAGGATATAAGATGAGTGGCTTTGGAAAGGACCATGGATTGGAAGCCCTTCACAAATACTTACAAGTTAAATCTGTTAAAATCAAGCACAATCAAACAGGTGAGGCTAACCTATTTGTCACCCATGCTCATAATCATAATCATATTGTCACATTCTACTGTAAAGGAACCTCTCAGACCAGACGGTGGAAAAGATGA 1593 0.4206 MSGLNNGDAGSVNKLPSIKFTKLFINGDFVDSVSGKTFETIDPRTGDVITRISEGEKEDIDIAVKAARHAFDFGPWPRMSGSDRAKILMKWAELIDEHAEELATLDSIDAGKLYHMCKNVEVPSAANTLRYYAGAADKIHGEVLKTSGEFHAYTLLEPVGVVGHITPWNFPNTMFYIKVAPSLAAGCTMVIKPAEQTPLSALYNAHLAKLAGIPDGVLNVVPGFGPTAGAALSSHMDVDKVSFTGSTQTGREIMQAAAKSNLKQVSLELGGKSPLIIFDDADVDKAAELALIGILYNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKEQYEKILSYIEHGKREGATLLTGGKTVGNKGYFIEPTIFSDIKDDMLIAQDEIFGPVMALKKFKTIDEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDIPFGGYKMSGFGKDHGLEALHKYLQVKSVKIKHNQTGEANLFVTHAHNHNHIVTFYCKGTSQTRRWKR* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03813 530 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Lapu3g03813 530 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Lapu3g03813 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
Lapu3g03813 530 SUPERFAMILY ALDH-like 15 495 IPR016161 GO:0016491
Lapu3g03813 530 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 14 494 - -
Lapu3g03813 530 FunFam Aldehyde dehydrogenase3 271 460 - -
Lapu3g03813 530 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Lapu3g03813 530 Pfam Aldehyde dehydrogenase family 29 491 IPR015590 GO:0016491
Lapu3g03813 530 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 25 288 - -
Lapu3g03813 530 FunFam Aldehyde dehydrogenase, putative 463 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03813 Lapu-Chr3 61582579 61593578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03813 14 496 Aldehyde Dehydrogenase Gene Family AT3G24503 70.103 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03813 K12355 - gmx:100811540 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03813 3 61582579 61593578 Lapu4g00146 4 1429561 1436102 PCT