Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03796 ATGGGGGAAGGGGAGGGTGAGGGGAGTGACTGTGCTCCCAAGAATGCTGTGGCTAACGACGTCGTCGTGAATGCGCTTTTGCCGTCCGATGTTCCCGCCAAGAAGCTCGCGAGGCAACTCGATTTCACCGGCTTCGGCGGGATGCCGCCGCAGCCGCCGGTGGTTTTGCCGCTGCCGCCTTCTGCTTCTGTCAGGGTTGGGAAACCAGAATCTCCAAAGTCGAGAGCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCCAAGAAGCAAAAGCAGTGCAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAACGTGGAAAATGAAGCTGCTAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGTATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAAGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCACCTATATCAAAGAAAAGAAAAGGTCAAGAACTCTTATTTGGGCCAACCATCAAGGATTCATCAGTTGGTAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGTTCCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGTGTTGGACCGGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCAAGAGCAATTACCAGGCCAAAAGGAAGCTGATGTTGAGAAAGCTGTGGCTGATGATGATTGTTTGAGTGCAAACAAGACAGATAAAATCAGCCCAGATGATTCTTGTTCAGATGGTGCTGATGTCCCGAAAGGGAGGCCAATGTCCCCTGGAACCTTGGCATTAATGTGCGATGAGCAAGACACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCACATGCTTGCAACACATCTTCACAACCGCCTTATGGACAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAGGATTGTACTGACAAAATTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTTGCCAGAAGTGAATTAGAGAGTCAAAAGGACGCAAACAACAATGGCACTGGAAATGCCAATACTGAGACAGCGCATCAGCAGGGAGCCACTAATAATGGTGTTACCAAAGCTGAGGGCAACATTACTTCTACATCTTCGTTCCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1650 0.4539 MGEGEGEGSDCAPKNAVANDVVVNALLPSDVPAKKLARQLDFTGFGGMPPQPPVVLPLPPSASVRVGKPESPKSRARPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGPTIKDSSVGRLGQQANNVRVPVPSSSLSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDHTETSLASSTQEQLPGQKEADVEKAVADDDCLSANKTDKISPDDSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTSASPIGSRAHACNTSSQPPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSFARSELESQKDANNNGTGNANTETAHQQGATNNGVTKAEGNITSTSSFPGGSLIPEK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03796 549 MobiDBLite consensus disorder prediction 374 402 - -
Lapu3g03796 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Lapu3g03796 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Lapu3g03796 549 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Lapu3g03796 549 Coils Coil 123 143 - -
Lapu3g03796 549 SMART CXC_2 173 214 IPR033467 -
Lapu3g03796 549 SMART CXC_2 88 128 IPR033467 -
Lapu3g03796 549 MobiDBLite consensus disorder prediction 496 543 - -
Lapu3g03796 549 MobiDBLite consensus disorder prediction 496 549 - -
Lapu3g03796 549 MobiDBLite consensus disorder prediction 352 414 - -
Lapu3g03796 549 PANTHER TESMIN/TSO1-RELATED 53 485 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03796 Lapu-Chr3 61426743 61438325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03796 31 499 CPP Transcription Factor Family AT4G29000 58.206 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lapu3g03796 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03796 - - gmx:100786353 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03796 3 61426743 61438325 Lapu3g03796 3 61426743 61438325 ECH