Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03792 ATGACCACCGTAACAGTCACCACTCGATCTCAGATCCTCCATCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTCCGGCGCCGCCTTATCGCCACTCTCCTCCGCGACACTCCGCTCTCCGACCAAAAACACCTCAACCTCGCCGCAGACACTCTAGAAAGCGCGATCGCCTTCTCCAGCCCCGCCCTCTGCTCCTCCTCCCTCTCTCTCGTGGAGAAGCTACTCCTCCCTCTTCCCGACTTCGCTCTCTCCTCGCTGCTGCTCTCTCTCGTCCATGCTCTCCGCAACCGCCCAATCGAATCCGCCACCAGCCTCCTCCGAATCTTTCACTCCTACAACAACAACAACAACAGCGCTTCCCTCGCTAGGTCGGAAATCGCTCCCACGCTCTACGAGCGCCTCTTCTCTTTACACCTCTTCCCTGTCTTCCGCTGGTTCGACGAGCAGAGGACGAAGATTCTCACCTCCACTCCCTCAACCTCGAGCTATGAAAACGATTATTCGGTTTCTGAGGAGTACTCCGTGGTGCTGCCTTGCGCCAAGGTGCTGTCGAAGATGAGCGAGGAGCAGGCCGCAAAGCTCCGTGAGGTGGAGAGAGAGTACGAAGAGGTTCTAGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAATGAGAACAGTGACGAGGGGATAAGTCCACCGTCGTTGATACTGAAGAGCACCGCTGAAGGTGGCGGCACGGTGAACAGAACGGAGGAGATGACGCAAATGAGTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAACATCTATTGAATTTTTGAGCCCCAGTTCCAGCAGAAGATCTTCCGAGACGCCATTTTATCCTCAAAGAGTCTTTTCCAGAATTCTCAAACCCAAAAATCTTTCAAACACTTCGACAACGCCAGTCTATTTAAACTCAATCGCTGACGCTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAATGACAAAACTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAACGCAAACCATCTTCAAACAATCCAGGGGTTCTCCAGATTATCCTATGGCAGACTTCGATAACCCGCTGAATGGAATTGGGAAACATGCTCCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAATACTCAGCTGCCCAAAACAAATTACGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGCATGAGAGTCCATATGAAGATACTGAGGCAGTTGTGCAGTCAACAACGCCATCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGCTGATGGAATGATGAGCGAGTTACGCTGTGCAATCAATAATCTGTACATGTCAGAGGTTCTCCAGGAATCGGAAATGGCCGTGCTTCAAGTTGAGAAGTTCTGGAGAGGTGTGAATCTAGGAGTGGATATCCATAGAATGTTAGTAAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCAGAGATGGGGTCTAGGGACAACTCTGTTATCAAAACTCTCACCCGTGTGGAGACTGATGTGGAATGTATCATGGCTCTTTTCAAGAACGGGTTAACGGAGGCTGTTGTGTTGTTGTATCTACTTAACCCTCCCATTACGAGTCTTGCGGAGATGGAGATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGATGAAGAATTGGTTAAGATGTGTTTGAAGCCAAAAACAGCTGCAGTGCTTTTACTTGCAAGAATAATTGGAAGCAGTGAAGAGATAATTGCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCTGTGGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGAGCAACATTGCTGATAAAGCAGAGTTGTCACCTCTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTTCCGAGTTGGTCAAATTAAATAGGAGGACTTTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGACAGCCCTTCACGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCTATGGATACTCTTATTTCATGCCTGACAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGCTTCGACTTCTCCGGAAAACCTTTAACCAGAGAAGTCCTCATTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTAGTACTGGTGGATCATCAGATTAGCAACTCCAGTCCAGAAATAGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAGTTGCATACATTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAAAATGCTTTATATCAGCTACATGGCTCACATACATGTTGACCATTCTACCAGATACAGGGATACAAGTAGCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAGTTCTGCCAGGGAAGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTATGCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTATACTAAGGATATCTTAAAAGGGTCGAGAGAGCTGAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAAGCTCTGGTTGTAGAAAATGAATCTAAAGCGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGAGAAAATGGAGAGGTGGTGTCTGTCATTTGCTCTAAGGATAAAATTTTTTCTGGCCATACAGATGGCACAATTAAGGTCTGGACATTGAAGAATAACTTATTCCATCTGTTGCAAGAGATCCAAGAACATACTAAGGCAGTGACAAACTTGGTGATTTCAGAATCTGGTGATAGACTATACAGTGGCTCACTTGACCGAACTGCAAAGGTCTGGTCTACTGGAAAGGCAGCAATACATTGCGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCACAGGGAACTGGTGTCAAGGTTCAGTCGCTGAATGGAGAGTCAAAGTTGCTGAATTCTAGCAAATACGTGAAGTGTTTGGCTCATGTTCACGGGAAATTATATTGTGGATGCCATGACAGCAGTGTTCAGGAGATAAATTTGGCCACTGGAACAATCAATACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAATCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTTCTATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAAGATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAACGCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAAGGTCAATTGCATGGCTCTAGACAGCAGTGAAGAGGTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4011 0.4465 MTTVTVTTRSQILHHTAAFTSSVLSQSELRRRLIATLLRDTPLSDQKHLNLAADTLESAIAFSSPALCSSSLSLVEKLLLPLPDFALSSLLLSLVHALRNRPIESATSLLRIFHSYNNNNNSASLARSEIAPTLYERLFSLHLFPVFRWFDEQRTKILTSTPSTSSYENDYSVSEEYSVVLPCAKVLSKMSEEQAAKLREVEREYEEVLDENCRVLAEYFKEVLVNENSDEGISPPSLILKSTAEGGGTVNRTEEMTQMSVLENGRYNPIWSERETSIEFLSPSSSRRSSETPFYPQRVFSRILKPKNLSNTSTTPVYLNSIADADFSLDESLLSSSSDSEAENEENDKTIALLEPRQSQIQEQTQTIFKQSRGSPDYPMADFDNPLNGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPHESPYEDTEAVVQSTTPSTSPNSVITQATADGMMSELRCAINNLYMSEVLQESEMAVLQVEKFWRGVNLGVDIHRMLVKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNSVIKTLTRVETDVECIMALFKNGLTEAVVLLYLLNPPITSLAEMEIVESLITVLNTKDEELVKMCLKPKTAAVLLLARIIGSSEEIIASSVVNTLFSEKAIGTIVSSFGADLAKERIAAVEILLRCMEEDGTCRSNIADKAELSPLMETLIGADDGERFKIIQFFSELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLQTALHDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLTNTDFPVTQLAAADTIMSLQGSFDFSGKPLTREVLIKRAGIDKSSRSLVLVDHQISNSSPEIDITPEEEKAADDWERRVAYILVSHEFGTIFEALADGMKSRNPELRSKCFISATWLTYMLTILPDTGIQVAARACLLKQFIAKLSSAREVEDRILSMVALNSFMHFPEGLGDLTSYTKDILKGSRELKRSCPLASKMLKALVVENESKADIWIHKELIKEDCRENGEVVSVICSKDKIFSGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTAKVWSTGKAAIHCVQVYDMKDQIHNLVVTNSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEINLATGTINTIQSGYKRLLAKANPIHALQIHGELIYAAGSSLDGSSIKIWNNSNYSMVGSLQTGSEVRAMAVSSRLIYLGCKGGTVEIWDKKKRSKVDTLQMGTNCKVNCMALDSSEEVLVIGTSDGQIQAWEMN* 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03792 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1093 1125 - -
Lapu3g03792 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1302 1336 - -
Lapu3g03792 1336 CDD RING-Ubox_PUB 396 448 IPR045210 -
Lapu3g03792 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1302 1336 IPR001680 GO:0005515
Lapu3g03792 1336 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1335 - -
Lapu3g03792 1336 SMART Ubox_2 398 462 IPR003613 GO:0004842|GO:0016567
Lapu3g03792 1336 SUPERFAMILY WD40 repeat-like 1064 1335 IPR036322 GO:0005515
Lapu3g03792 1336 Coils Coil 697 717 - -
Lapu3g03792 1336 Gene3D - 540 999 IPR011989 -
Lapu3g03792 1336 SUPERFAMILY ARM repeat 556 944 IPR016024 -
Lapu3g03792 1336 Pfam U-box domain 396 466 IPR003613 GO:0004842|GO:0016567
Lapu3g03792 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1093 1125 IPR001680 GO:0005515
Lapu3g03792 1336 Gene3D - 1025 1160 IPR015943 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1044 1081 IPR001680 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1213 1252 IPR001680 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1160 1203 IPR001680 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1294 1334 IPR001680 GO:0005515
Lapu3g03792 1336 SMART WD40_4 1255 1291 IPR001680 GO:0005515
Lapu3g03792 1336 Pfam WD domain, G-beta repeat 1090 1125 IPR001680 GO:0005515
Lapu3g03792 1336 SUPERFAMILY RING/U-box 394 470 - -
Lapu3g03792 1336 Coils Coil 184 211 - -
Lapu3g03792 1336 Gene3D - 1161 1336 IPR015943 GO:0005515
Lapu3g03792 1336 ProSitePatterns Trp-Asp (WD) repeats signature. 1321 1335 IPR019775 -
Lapu3g03792 1336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 472 IPR013083 -
Lapu3g03792 1336 ProSiteProfiles U-box domain profile. 394 469 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03792 Lapu-Chr3 61394988 61402294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03792 396 473 U-box Gene Family AT1G71020 47.436 4.71e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03792 - - vun:114176884 2283.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03792 3 61394988 61402294 Lapu3g03792 3 61394988 61402294 ECH