Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03791 ATGAATAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGCAAACCCTAACAACTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTGCTCCTCCTCCTCCTCCTCCTCCTTCTCAAGCTTCTTCTCCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCATATAACCCCTCTTCTTCTCTCCCTCTTCCTTCTTGGCATGATAACAATCAAGAGCTACCTGAGTCATGGAGCCAGCTACTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGCTATGTGCCAGGTTCAGTCCAAGAAGTTGGAGAACTGGGAGCAACAAATGCTGAGTCAGGCTCCAAGGGCTCCTATTGTTGATGTTAAGCAAGAAGGCTGTGTGAACAGCTATGTGTACGGTCATGGAAACGAAGAGTTTCACCCAGCAAAGCCAACTTGGTCTCAAATAGTGCCTGCTTCTTCCCCAAAATCGTGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCTAACAATAACACAGAAGCTAGGCCTCCCCCCCCAGACCCTTCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCGTTTGGAAAGACTGACACAGCATCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAATTAGTGAGCAGGTAGATTATCAAGAAGAAGCAAAGAAGGACCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTATCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGGGGGTTTCGGTAG 1062 0.4727 MNRGVLQSSPVQQMMAANPNNWWNINTMRPPPPAPPPPPPPSQASSPFFSTPSNFLTPYNPSSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGAMCQVQSKKLENWEQQMLSQAPRAPIVDVKQEGCVNSYVYGHGNEEFHPAKPTWSQIVPASSPKSCVTSFSSSMLDFSNNNTEARPPPPDPSSECNSTAAGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKAISEQVDYQEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03791 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Lapu3g03791 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 265 IPR036638 GO:0046983
Lapu3g03791 353 Gene3D - 213 266 IPR036638 GO:0046983
Lapu3g03791 353 MobiDBLite consensus disorder prediction 173 212 - -
Lapu3g03791 353 CDD bHLH_AtbHLH_like 213 262 IPR045239 -
Lapu3g03791 353 FunFam transcription factor bHLH68 isoform X1 212 265 - -
Lapu3g03791 353 SUPERFAMILY Formin homology 2 domain (FH2 domain) 31 110 - -
Lapu3g03791 353 MobiDBLite consensus disorder prediction 21 54 - -
Lapu3g03791 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 335 - -
Lapu3g03791 353 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03791 Lapu-Chr3 61388219 61393000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03791 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.682 3.77e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03791 - - gmx:100785156 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03791 3 61388219 61393000 Lapu3g03791 3 61388219 61393000 ECH
Lapu3g03791 3 61388219 61393000 Lapu4g00108 4 1074642 1079654 PCT