Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03789 ATGTCTGAGGCATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGGGTTGAACCTGAAGGCCACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCTGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGGGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGCTGCCTTGTTCTCTCCAAGGGGAACTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGTGCCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAGTTGTTCCACACTCTCCAAAACCATTGCATGAGAAGAAGCCTCAAATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGATGCTGAGGCAGAAGCCAAGTCTGAATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTTTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTTCTGGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCTCCAAGAGCCGTGGAAAAGTGCAGAAGTCGGAACTAG 876 0.4692 MSEALEEVPSMKGGCEEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGGSGNWNGGSEVGLGKDAALFSPRGTVSAAKSLTLTATDCANQPTALGASVLKEVVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSGRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCRSRN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03789 291 FunFam Auxin-responsive protein 165 283 - -
Lapu3g03789 291 SUPERFAMILY CAD & PB1 domains 167 272 - -
Lapu3g03789 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 278 IPR003311 GO:0005634|GO:0006355
Lapu3g03789 291 ProSiteProfiles PB1 domain profile. 170 273 IPR000270 GO:0005515
Lapu3g03789 291 Pfam AUX/IAA family 24 282 IPR033389 -
Lapu3g03789 291 Gene3D - 164 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03789 Lapu-Chr3 61332363 61335743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03789 173 281 B3 DNA Binding Superfamily AT4G23980 31.193 1.03e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lapu3g03789 AUX_IAA 2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03789 K14484 - gmx:100778529 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03789 3 61332363 61335743 Lapu4g00107 4 1041923 1045719 PCT