Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03785 ATGGAACGCATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTACCTCGCGACGCATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACAGTAAAACCAAGCATCCGCAACTTCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGAATTCCTAACATAAAATGGTCTGGCATAGACGGGGAGGAAAACGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATACCGGGATTCGACTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGTACAGCACGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAATCTCTAGGATATGTACTTTTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCCACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTCTGCAAAACTCATCCCGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGAGACCTGATTATGGATTCTTAAAGCGCCTATATCGGGACCTATTTGCACGAGAAGGTTATGAATTTGATTACGTTTTTGATTGGACCATGTTGAAGTTCCAGCAATCTCAAAAGAATTCAGTGCTCCCGCCATTATCTCCAGTTCCAGGAGCAAGTAACAGTCGAGCAATTCCAATGGATATTGACAACCATCAAGGTTATGTTAAGGAGCGTATTAGAGCAGGCGATGCTACTGGTTCTGGTGTTAAAACTCAGTTTAAACCACCAGTGGCTAAAAATTTGAGTTATGAGAATCCACTTGACAAAAATACTTTTGGAGAAGCAAATATACCCTCTGCTTCATACTCTCCTGCTAGTACTTCAAAAAGGAACTCCTTGAAGCAATCTTTGTCTGCCGAAGCTTCCATTCCTGGACACGGGCAAGGCAGTAAAATTGGCCCTTCAGGTAGCTGGATGTCATCTCTGCAGCACATGTCTTCTGCTAAATGA 1275 0.4275 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEENVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKTHPVEFASYFHYCHSLTFDQRPDYGFLKRLYRDLFAREGYEFDYVFDWTMLKFQQSQKNSVLPPLSPVPGASNSRAIPMDIDNHQGYVKERIRAGDATGSGVKTQFKPPVAKNLSYENPLDKNTFGEANIPSASYSPASTSKRNSLKQSLSAEASIPGHGQGSKIGPSGSWMSSLQHMSSAK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03785 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lapu3g03785 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Lapu3g03785 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03785 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lapu3g03785 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03785 424 FunFam Casein kinase I isoform delta-like 1 339 - -
Lapu3g03785 424 MobiDBLite consensus disorder prediction 374 398 - -
Lapu3g03785 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03785 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lapu3g03785 424 MobiDBLite consensus disorder prediction 374 424 - -
Lapu3g03785 424 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Lapu3g03785 424 MobiDBLite consensus disorder prediction 408 424 - -
Lapu3g03785 424 PANTHER CASEIN KINASE-RELATED 7 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03785 Lapu-Chr3 61285525 61292941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03785 9 215 EF-hand Containing Proteins AT4G23650 29.577 1.68e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lapu3g03785 Pkinase 3.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03785 K08960 - gmx:100779936 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03785 3 61285525 61292941 Lapu3g03785 3 61285525 61292941 ECH
Lapu3g03785 3 61285525 61292941 Lapu4g00099 4 917111 922636 PCT