Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03777 ATGGCTGAGCTACCTAGCTCAGAACCATCCTCATCCGCTTCTACCCGCAAGCACTCATCTTCGGAGGCCCATTTGCAAGGCCCGGATCAGAAAAAGCCCAAGCAAGCTCGAGATACCAGCAGCAAGCACCCCGTGTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACAGCCGAGATGGCCGCGCGTGCCCACGACGTTGCCGCGCTCGCCATCAAAGGCAGCTCCGCCATTCTCAACTTCCCCGAGCTAGCCGGCTCCCTACCCCGGCCAGAATCCAACTCGCCTCGTGACGTTCAGGCGGCGGCGGCGAAGGCGGCGGCCATGGAGGTGATGGATCCCCCGACGACTCCGTCGTCGACGCTGTCGCAGTCGTGTTCTTCATCCTCGTTGGCGGTTAGTTCGTCGTCGGGCGAGGCGTCAACGGCGGAGGAGCTGGGGGAGATAGTGGAGTTGCCGAGTCTGGGGACGAGTCTGGGTATAGCGGAGCGGAGTGAGGAGGTGGTGTTTGTGGAGCCGGTGGACGGGTGGCTGTATTCTCAGCCGTGGTGTGAGGGCATTTATGATGAGAGGGAGTGCGGGGGTTATTTTATTGGAGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGGTTTGAGGGTTCCTTGTGGCAGCATTAA 729 0.6022 MAELPSSEPSSSASTRKHSSSEAHLQGPDQKKPKQARDTSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGSSAILNFPELAGSLPRPESNSPRDVQAAAAKAAAMEVMDPPTTPSSTLSQSCSSSSLAVSSSSGEASTAEELGEIVELPSLGTSLGIAERSEEVVFVEPVDGWLYSQPWCEGIYDERECGGYFIGDEISMQESESMILCGFEGSLWQH* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03777 242 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g03777 242 MobiDBLite consensus disorder prediction 22 45 - -
Lapu3g03777 242 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 179 - -
Lapu3g03777 242 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Lapu3g03777 242 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Lapu3g03777 242 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 MobiDBLite consensus disorder prediction 1 46 - -
Lapu3g03777 242 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lapu3g03777 242 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03777 Lapu-Chr3 61206352 61207845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03777 11 208 AP2-EREBP Transcription Factor Family AT5G25810 57.789 2.01e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu3g03777 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03777 K09286 - gmx:100778201 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03777 3 61206352 61207845 Lapu3g03777 3 61206352 61207845 ECH
Lapu3g03777 3 61206352 61207845 Lapu4g00090 4 849905 850766 PCT