Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03771 ATGTCAATTTTTCATTCCGTTTTCTATGGCTTAGTAGTAGTTATTCTTCTTCTACAGAATCCTTGTGCAACACAATGCCATACCAAGGGAATTAGACCCAGGCCCGGCAATGGTTTATCTACCAATATGACCAGAGTCCAATTTTCAGAAGAGCAGTTCATGAAATGGGTGAGATTTGTAGGTGGCCTCAAACATTCTGTCTTTAAGACGGCGAAGAATAAGCTTTTTCCTTCTCGCACTTTGCACGTTTCCAAGAAGCCAAGCAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTGATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTGCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACTTATGGTTCTGCAACTTTTGCAGTGAATTCACCTTTTTTCATAGCCAAGAATATCACATTCAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTATGATCAACTGGGTAGGCATTACTACAAAGATTGTTATATCGAAGGGTCTGTGGATTTCATATTTGGAAATGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAAGTTACAGGGGCCCTAACAGCCCAAGGAAGGAGCAGCTTATTACAAGACACGGGATTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTATAAATGCACAGGAGCAGGAGCAAGCTACGCGGGACGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCTTTTATTTCCCTTAGCTATATTGATGGCTCTGAATGGATCAATCTTTCTCTTTGA 1131 0.4385 MSIFHSVFYGLVVVILLLQNPCATQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSRTLHVSKKPSKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPALKSFITIQGAGADNTIVQWGDTAQSQPLGTYGSATFAVNSPFFIAKNITFKNTAPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDQLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03771 376 SUPERFAMILY Pectin lyase-like 76 374 IPR011050 -
Lapu3g03771 376 Gene3D - 77 375 IPR012334 -
Lapu3g03771 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 373 - -
Lapu3g03771 376 FunFam Pectinesterase 77 374 - -
Lapu3g03771 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Lapu3g03771 376 Pfam Pectinesterase 87 368 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03771 Lapu-Chr3 61151271 61154599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03771 92 375 Carbohydrate Esterase AT1G05310 48.973 6.81e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03771 K01051 - gmx:100802832 711.449