Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03761 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCCAACACGAGGCAAGTGACATTTTCTAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAATTGTCTATTCTGTGTGGTGCAGAAATTGCTATTGTTGTGTTCTCAATTGGAAACAGACCTTACTCTTTTGGGCACCCTGGTGTTGACGTTGTTGCAGCCAAATTTCTTGAACAAGAAATCAAGTCAAATGATGTCAAACAAAAGAATGTAGAAGTTGGTGACATGGATAGGTTGAATCAACAACTGTTGGATATTGAAGCCCAGATAGTTGTGGAGGAAAAGAAGACCTTAGAACATGATGAGATACTAAAACAACACCAGGTCACACAACTCTCCCAGTTTAAAGAATTACAAAATTCATGTTTAGAGTTCCAACGTAGGGTGAAAGATTATATTGATGCGATTGAGGTATCAGAATGTTTGATCCTACTCGCACAAGAACCCGTAGTCGAAATTACAAAACAGGTGAAGAAAAGAAGAAATAATTGA 531 0.3842 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDVVAAKFLEQEIKSNDVKQKNVEVGDMDRLNQQLLDIEAQIVVEEKKTLEHDEILKQHQVTQLSQFKELQNSCLEFQRRVKDYIDAIEVSECLILLAQEPVVEITKQVKKRRNN* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03761 176 Coils Coil 89 109 - -
Lapu3g03761 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g03761 176 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g03761 176 PANTHER MADS BOX PROTEIN 3 135 - -
Lapu3g03761 176 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Lapu3g03761 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g03761 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g03761 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g03761 176 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lapu3g03761 176 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Lapu3g03761 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03761 Lapu-Chr3 61045330 61045860 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03761 1 160 Type I MADS-box Gene Family AT2G34440 39.766 8.00e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g03761 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03761 - - gmx:100791127 268.855