Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03760 ATGGATGGCAACAACGCTAACCATAGGATGTCAGAGAACAGCGATAATATTGCGGTGATGCCGCTATCCACGGTGTCAATCCTCAACAATTTCATAGACTTGGGTGTTTTCGATTTGGACGAGGCTCTTGCGGTGGTGGGTGGAGAATCACGGTGTCCAGTGGCAGCGTGCAAGTCCTACGTGTCGAACTTGCCCACAGTTAACGACGTGAGGAGGGATGAGGTTTGCTCCGTTTGCATGGAGGGGTTCACCCGCCACAACAGGGATGGGGAAAACAAACGAGTGCCGTGCGGCCACGTGTACCATTCAAACTGCATCACCCTCTGGTTGGAGCACTGCAGCTCTTGCCCCCTTTGCCGCCGCCATATCTCATTCTAA 378 0.5344 MDGNNANHRMSENSDNIAVMPLSTVSILNNFIDLGVFDLDEALAVVGGESRCPVAACKSYVSNLPTVNDVRRDEVCSVCMEGFTRHNRDGENKRVPCGHVYHSNCITLWLEHCSSCPLCRRHISF* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03760 125 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Lapu3g03760 125 SUPERFAMILY RING/U-box 69 124 - -
Lapu3g03760 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 122 - -
Lapu3g03760 125 Pfam Ring finger domain 76 120 IPR001841 -
Lapu3g03760 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 125 IPR013083 -
Lapu3g03760 125 SMART ring_2 76 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03760 Lapu-Chr3 61040244 61040621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03760 28 123 C3H Transcription Factor Family AT5G01980 37.624 9.08e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03760 K22378 - gmx:102669154 168.703