Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03759 ATGGGTCGTCGTAAGATTGAGATTACGGAAGTGAAGGACCCCAACACCAAGCAAGTTACGTTTTCCAAGCGCCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGGTGTTGTTGCAGGCAAATTTCTGCAACAAGAGAGGGCATCAGATGTTGATGTCAGACCAAATGCTGTTGAAGGAAATAGTTCATCTAATGCTGACAACATTGATGCACTGAATCAACAATTATCTGGTGTTCAAACTCAAATACAGGAGGAACATAAGAAGGCTGCTGAGCTTGACAGGAAACAGAAGCAACAAGACGTCACTAAACTCACCTACAACAAACCATTGCAACGTTCATACCTAAAGGTTCAGCGTAAGGTGGAGGATTATCTTGATGCCATTGAAGTGTCAGAGTATATGTTGCTCCTTGCAAAAGAACCTGTAATTGGAGTAACAAAACAAGTAATTACCAAAAGAAGAAAGAATTGA 555 0.409 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVGVVAGKFLQQERASDVDVRPNAVEGNSSSNADNIDALNQQLSGVQTQIQEEHKKAAELDRKQKQQDVTKLTYNKPLQRSYLKVQRKVEDYLDAIEVSEYMLLLAKEPVIGVTKQVITKRRKN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03759 184 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Lapu3g03759 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Lapu3g03759 184 Coils Coil 96 123 - -
Lapu3g03759 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 PANTHER MADS BOX PROTEIN 3 127 - -
Lapu3g03759 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Lapu3g03759 184 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03759 Lapu-Chr3 61026452 61027006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03759 1 167 Type I MADS-box Gene Family AT2G34440 36.723 4.76e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g03759 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03759 - - gmx:100790601 243.047