Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03747 ATGAACAAGATCAGCAACTTGAGTTGTGCTAGGAGCTCTGATCTCATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGATGTGGTCAGAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCAGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTTGAAGCAAAGAATATGAAGTCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCGTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGTGGGGAAACCCGATGGCACAAGACAGGTAAGACCAGACCAGTGATGGTGAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAATAGAAAACCCGAAAAGACCAACTGGGTGATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAAAAAGAGGGAGAGCTTGTGGTGTCGAAGATATTCTACCAGACACAACCGAGGCAATGCAACTGGTCAGATAGAAGTGCCACAACTGGTGAAGGAAGTGGAGAACAAATGGCCAACACTAATGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTGTTACTCACAGAGATGAAATGTCTGCTATCGTTGGAGTCCCTCAAATAACAACCTTCAACGCTGCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGCAACACGTGTTGGAATAGGAGAAGCTTCCACGGCAAGAGAAGTGCAAGCATCAGGGTCGTGTGATGAAGTGCATGAACGGCACAATATTGTAGCACATCATCATCAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCATCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGACGACAACTCCTACCACGTCTCCAGAATCATGCTTCAAAATGAAAATTTCCAGCAACAGCAGCTACACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAGTACTCCTCTTACTGGCCAGACCCTGGCAACCTGCAGGGTCATCATGAGTAG 1356 0.4668 MNKISNLSCARSSDLIDAKLEEHQLCGSKQCPGCGQKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEQMANTNGRRDSGSGSCSSKEVVTHRDEMSAIVGVPQITTFNAALDIQQLKSDHFSFIPFRKSFDEATRVGIGEASTAREVQASGSCDEVHERHNIVAHHHQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQLHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWPDPGNLQGHHE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03747 451 MobiDBLite consensus disorder prediction 216 248 - -
Lapu3g03747 451 FunFam NAC domain-containing protein 73 56 212 - -
Lapu3g03747 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Lapu3g03747 451 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Lapu3g03747 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Lapu3g03747 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 11 337 IPR044799 GO:0003700
Lapu3g03747 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03747 Lapu-Chr3 60919211 60924919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03747 14 440 NAC Transcription Factor Family AT5G56620 53.422 1.19e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g03747 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03747 - - gmx:100794811 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03747 3 60919211 60924919 Lapu3g03747 3 60919211 60924919 ECH