Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03740 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCTCTCCTCCACGAATCCACGCCGGAGATCTTTTCACCCTACTCCGTCAATGCCGATTACTCTCAGTACTCTCTGCAAGAAGCGCTCAGCGCGCTACAACACTACGATTCCACAGATGCCGAGTCAGACTCTGATGTCCCGTCCAGGGAACCGGAAGTCCCGGTTGACGCCTATTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCTCACGACTGGACCGAGTGTCCTTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTATCACTACTCCGGCACGGCCTGCCCCGACTTTCGCAAGGGGAGTTGCAAGAAGGGTGACACCTGCGAGTACGCGCACGGGGTTTTCGAGTGCTGGCTCCATCCCGCCCGTTACCGTACTCAACCGTGCAAGGATGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCACACACCCGAGCAACTTCGAGTTTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGCTCTCCTTTAAGACACGCGGTCGAGTCCTCCAAGGCGGTGTTGCCGTTTGTGTCTTCTCCCGGGTCGGTGTCGCCGCCAGTGGAGTCTCCGCCTATGTCGCCGATGACTCGTTCTGGGTCTGTGTGTGTTAACGAGATGGTTGCTTCGATGAGAAACTTGCAACTGGGGAAGATTAAGTCGCTGCCTTCTTCCTGGAATGTCATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCGGCGATCCGACCCGGATTCTTCAGCCTGCCTTCGACCCCGACGCAGGCTCCGGTTCGCGGCGGGGTGAACTACTTTGACATGTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAATGCTCTTGACGGGTCGGGTTCGGGTGAAGGCGTGGGTCCGGATGTGGGGTGGGTTTCGGAGCTTGTGAGTCGCTGA 1080 0.5907 MMLGETHRANPTVHVPPWPLLHESTPEIFSPYSVNADYSQYSLQEALSALQHYDSTDAESDSDVPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDTCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAVESSKAVLPFVSSPGSVSPPVESPPMSPMTRSGSVCVNEMVASMRNLQLGKIKSLPSSWNVIGSPGFGSPRGPAIRPGFFSLPSTPTQAPVRGGVNYFDMWDQSCEEEPVMERVESGRNIRARMFEKLSKENALDGSGSGEGVGPDVGWVSELVSR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03740 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Lapu3g03740 359 Gene3D - 120 184 - -
Lapu3g03740 359 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Lapu3g03740 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Lapu3g03740 359 PANTHER UNKEMPT FAMILY MEMBER 39 357 IPR045234 -
Lapu3g03740 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Lapu3g03740 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03740 Lapu-Chr3 60841908 60854639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03740 69 231 C2H2 Transcription Factor Family AT5G12850 56.213 7.50e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g03740 zf-CCCH 6.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03740 - - gmx:100808676 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03740 3 60841908 60854639 Lapu3g03740 3 60841908 60854639 ECH