Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03724 ATGAGTATCCAAAAGGGTCGTCATGAAGAAGAGATGTGTACCTCAGAAACCACCGGTAAAGTGGTTGTGGTTGCAGTTAAAGCTTCTAGAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGAGATTCCATTAAGCTGTTGGTGGTCATTCCGGCTCTTTCTTCAAGCAAGAGGGTATGGGGAATTTCAAGGTTTACTACTGACTGTGCCTCTAGTAATTGGAGATCCAGTTTAGGCACTGCTTCAGATCAGAAAGAAGTTATTACAAAATCCTGTTCTCAGTTAGTGCTTCAACTCCATGATTTTTACGATCCAGAGAAGATAAAGATCAGAGTGAAGATTCTTTCTGGTTCCTTATGCGGAGCTGTGGCTGCTGAGGCCAAGAGAGTTCAGTCAAGCTGGGTTATATTGGACAAAAAGTTGAAACCTGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGTAATCATGAAGCGGTCTAGGCCAAAGATTCTTCGCTTGAATTTGAACAGTTCACCTAAGATGGGACTAAACATGGGTTGTCCATTAACACTTGCGAGAAACTTGAAAGACAACTCTGAACATGCAGATATGATTAGAGGTCCAGCTGTTACTCCTGCTAGCAGTCCTGAACAAGGTTCACCACCACTGACTGCAACCGATATTGGAACATCATCAATATCAAGCTCAGATCCTGCTACTTCACCATTTTTCCACTCTGACAACTATGGGAGACAGAGAGGTTTTACCTTTGTTCACGAGGGACTGACCAACCTAGAGGATATTGAATCTGACTCTGAGAGTGAAAAGCTAAGTATGTCGTCCAAGAGTTCATATTTTCAGCCATGGATTGCAAATGTGATTTGCATGGATGGTGATTTCTCAAAGCATGAAGACAACATGCAAAGATCCAGCGACCAGACTTTGGCTACTGCGTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATAAAGATCCTATACTAGGAATGCTTAATTGTAAAATTGATCTGAACTTGAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCTAAAAGTTCACCTCCTGGCCCACCCCCATTGTGCTCTATTTGTCAGCACAAGGCACCTGTCTTTGGCAATCCACCAAGGTGGTTTACATTTGCTGAATTGCAACTTGCCACAGGTGGTTTTTCACAAGCAAACTTCTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGCGGAGTCCTGTCTGACGGACAAGTCATTGCTGTGAAACAGTATAAATTAGCCAGCACTCAAGGAGATAAAGAGTTTTGCTCTGAAGTAGAGGTCTTAAGCTGTGCACAACATCGCAATGTTGTGATGCTAATTGGATTCTGTGTGGAGAATGGAAGAAGATTGCTAGTTTACGAATACATTTGCAATGGCTCTCTGGATTCTCATCTCTACAGACGAAAGCAGAATATACTGGAATGGTCCGCAAGACAAAAAATAGCAGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCTAACAATATCCTCCTCACTCATGATTTTGAAGCTTTAGTAGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGAGTGATAGGAACCTTTGGGTATTTGGCCCCAGAATACGCTCAGAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCGTTTGGGATAGTACTGCTGGAGCTCATCACAGGAAGAAAAGCAGTGGATATAAACCGCCCCAAAGGCCAACAATGTCTAAGTGAATGGGCAAGGCCATTGCTTGAAAAACAAGCCATTTATAAACTGGTAGATCCGAGCTTAAGAAACTGCTATGTTGATCAAGAGGTGTACCGCATGCTGCAATGTTCCTCTTTGTGCATAGGACGGGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTGAGGATGCTGGAAGGTGACATTCTAATGTGA 2031 0.4328 MSIQKGRHEEEMCTSETTGKVVVVAVKASRDISRTALVWALTHVVQPGDSIKLLVVIPALSSSKRVWGISRFTTDCASSNWRSSLGTASDQKEVITKSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDKKLKPEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKMGLNMGCPLTLARNLKDNSEHADMIRGPAVTPASSPEQGSPPLTATDIGTSSISSSDPATSPFFHSDNYGRQRGFTFVHEGLTNLEDIESDSESEKLSMSSKSSYFQPWIANVICMDGDFSKHEDNMQRSSDQTLATAYEALLQKFSKLDKDPILGMLNCKIDLNLSKSVREAISLAKSSPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLSDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVENGRRLLVYEYICNGSLDSHLYRRKQNILEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELITGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLVDPSLRNCYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRMLEGDILM* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03724 676 SUPERFAMILY Protein kinase-like (PK-like) 380 671 IPR011009 -
Lapu3g03724 676 MobiDBLite consensus disorder prediction 209 246 - -
Lapu3g03724 676 Gene3D Phosphorylase Kinase; domain 1 372 475 - -
Lapu3g03724 676 Gene3D Transferase(Phosphotransferase) domain 1 476 674 - -
Lapu3g03724 676 ProSitePatterns Tyrosine protein kinases specific active-site signature. 521 533 IPR008266 GO:0004672|GO:0006468
Lapu3g03724 676 ProSiteProfiles Protein kinase domain profile. 400 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g03724 676 MobiDBLite consensus disorder prediction 216 246 - -
Lapu3g03724 676 Pfam Protein tyrosine and serine/threonine kinase 404 670 IPR001245 GO:0004672|GO:0006468
Lapu3g03724 676 PANTHER OS01G0750732 PROTEIN 312 674 - -
Lapu3g03724 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 372 475 - -
Lapu3g03724 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 476 676 - -
Lapu3g03724 676 CDD STKc_IRAK 406 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03724 Lapu-Chr3 60723194 60727611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03724 380 674 Trihelix Transcription Factor Family AT1G70460 51.163 2.32e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu3g03724 PK_Tyr_Ser-Thr 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03724 - - gmx:100305413 1258.43